- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.04 Å
- Oligo State
- monomer
- Ligands
- 1 x FRU- GLC- GLA: alpha-D-galactopyranose-(1-6)-alpha-D-glucopyranose-(1-2)-beta-D-fructofuranose(Non-covalent)
- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 27 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
CA.3: 6 residues within 4Å:- Chain A: R.96, P.97, Y.280, P.282, D.283, L.314
No protein-ligand interaction detected (PLIP)CA.4: 4 residues within 4Å:- Chain A: A.182, V.183, D.185, V.188
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:A.182, A:V.183, A:D.185, A:V.188, H2O.2
CA.5: 1 residues within 4Å:- Chain A: D.410
5 PLIP interactions:1 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:D.410, H2O.1, H2O.1, H2O.2, H2O.8
CA.6: 3 residues within 4Å:- Chain A: T.418, A.419, I.420
No protein-ligand interaction detected (PLIP)CA.7: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.8: 1 residues within 4Å:- Chain A: K.582
No protein-ligand interaction detected (PLIP)CA.9: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.10: 2 residues within 4Å:- Chain A: P.248, S.251
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:P.248, A:S.251
CA.11: 6 residues within 4Å:- Chain A: D.458, D.460, D.462, F.464, N.466, N.476
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:D.458, A:D.462, A:F.464
CA.12: 4 residues within 4Å:- Chain A: L.40, P.41, S.42, K.300
No protein-ligand interaction detected (PLIP)CA.13: 3 residues within 4Å:- Chain A: W.48, Y.85, N.308
No protein-ligand interaction detected (PLIP)CA.14: 6 residues within 4Å:- Chain A: Q.368, M.369, F.371, N.558, Y.608, T.609
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:Y.608, H2O.8
CA.15: 2 residues within 4Å:- Chain A: S.515, N.516
No protein-ligand interaction detected (PLIP)CA.16: 6 residues within 4Å:- Chain A: S.107, Q.108, G.109, W.110, D.114, L.191
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:S.107, A:D.114
CA.17: 6 residues within 4Å:- Chain A: P.305, Y.306, L.307, R.646, E.647, L.649
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:R.646, A:L.649
CA.18: 6 residues within 4Å:- Chain A: V.84, Y.85, G.86, W.650, V.651, Q.656
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:V.84, A:G.86
CA.19: 5 residues within 4Å:- Chain A: V.498, A.502, L.506, R.507, V.508
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:V.498, A:L.506, H2O.11
CA.20: 6 residues within 4Å:- Chain A: N.101, Q.106, K.259, N.260, A.261, F.262
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:K.259
CA.21: 2 residues within 4Å:- Chain A: A.30, R.31
No protein-ligand interaction detected (PLIP)CA.22: 1 residues within 4Å:- Chain A: R.31
No protein-ligand interaction detected (PLIP)CA.23: 4 residues within 4Å:- Chain A: L.482, R.518, L.530, V.531
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:V.531
CA.24: 2 residues within 4Å:- Chain A: E.146, W.147
No protein-ligand interaction detected (PLIP)CA.25: 3 residues within 4Å:- Chain A: Y.432, D.433, R.434
No protein-ligand interaction detected (PLIP)CA.26: 3 residues within 4Å:- Chain A: Y.255, N.256, K.259
No protein-ligand interaction detected (PLIP)CA.27: 1 residues within 4Å:- Chain A: H.152
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:H.152
CA.28: 2 residues within 4Å:- Chain A: R.624, Y.659
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:Y.659
CA.29: 2 residues within 4Å:- Chain A: R.31, E.136
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Meyer, T. et al., The plant defense signal galactinol is specifically used as a nutrient by the bacterial pathogenAgrobacterium fabrum. J. Biol. Chem. (2018)
- Release Date
- 2018-04-11
- Peptides
- Periplasmic alpha-galactoside-binding protein: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.04 Å
- Oligo State
- monomer
- Ligands
- 1 x FRU- GLC- GLA: alpha-D-galactopyranose-(1-6)-alpha-D-glucopyranose-(1-2)-beta-D-fructofuranose(Non-covalent)
- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 27 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Meyer, T. et al., The plant defense signal galactinol is specifically used as a nutrient by the bacterial pathogenAgrobacterium fabrum. J. Biol. Chem. (2018)
- Release Date
- 2018-04-11
- Peptides
- Periplasmic alpha-galactoside-binding protein: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
C