SMTL ID : 6fyy.1

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY 3.02 Å
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
117 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
5 x ZN: ZINC ION(Non-covalent)
1 x MET: METHIONINE(Non-covalent)
1 x GCP: PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Llacer, J.L. et al., Translational initiation factor eIF5 replaces eIF1 on the 40S ribosomal subunit to promote start-codon recognition. Elife (2018)
Release Date
2018-12-05
Peptides
40S ribosomal protein S0: D
40S ribosomal protein S1: E
KLLA0F09812p: F
KLLA0D08305p: G
40S ribosomal protein S4: H
KLLA0D10659p: I
40S ribosomal protein S6: J
40S ribosomal protein S7: K
40S ribosomal protein S8: L
KLLA0E23673p: M
KLLA0B08173p: N
KLLA0A10483p: O
40S ribosomal protein S12: P
KLLA0F18040p: Q
40S ribosomal protein S14: R
KLLA0F07843p: S
40S ribosomal protein S16: T
KLLA0B01474p: U
KLLA0B01562p: V
KLLA0A07194p: W
KLLA0F25542p: X
40S ribosomal protein S21: Y
40S ribosomal protein S22: Z
KLLA0B11231p: 0
40S ribosomal protein S24: 1
KLLA0B06182p: 2
40S ribosomal protein S26: 3
40S ribosomal protein S27: 4
40S ribosomal protein S28: 5
40S ribosomal protein S29: 6
40S ribosomal protein S30: 7
Ubiquitin-40S ribosomal protein S27a: 8
KLLA0E12277p: 9
60S ribosomal protein L41-A: a
Eukaryotic translation initiation factor 1A: b
Eukaryotic translation initiation factor 2 subunit alpha: c
Eukaryotic translation initiation factor 2 subunit gamma: d
Eukaryotic translation initiation factor 2 subunit beta: e
Eukaryotic translation initiation factor 5: f
Eukaryotic translation initiation factor 3 subunit A: g
Eukaryotic translation initiation factor 3 subunit B: h
eIF3c,Eukaryotic translation initiation factor 3 subunit C: i
Eukaryotic translation initiation factor 3 subunit G: j
Eukaryotic translation initiation factor 3 subunit I: k
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
D
A
E
B
F
C
G
D
H
E
I
F
J
G
K
H
L
I
M
J
N
K
O
L
P
M
Q
N
R
O
S
P
T
Q
U
R
V
S
W
T
X
U
Y
V
Z
W
0
X
1
Y
2
Z
3
a
4
b
5
c
6
d
7
e
8
f
9
g
a
h
b
i
c
j
d
k
e
l
f
m
g
o
h
p
i
q
j
r
k
s

40S ribosomal protein S0

40S ribosomal protein S1

KLLA0F09812p

KLLA0D08305p

40S ribosomal protein S4

KLLA0D10659p

40S ribosomal protein S6

40S ribosomal protein S7

40S ribosomal protein S8

KLLA0E23673p

KLLA0B08173p

KLLA0A10483p

40S ribosomal protein S12

KLLA0F18040p

40S ribosomal protein S14

KLLA0F07843p

40S ribosomal protein S16

KLLA0B01474p

KLLA0B01562p

KLLA0A07194p

KLLA0F25542p

40S ribosomal protein S21

40S ribosomal protein S22

KLLA0B11231p

40S ribosomal protein S24

KLLA0B06182p

40S ribosomal protein S26

40S ribosomal protein S27

40S ribosomal protein S28

40S ribosomal protein S29

40S ribosomal protein S30

Ubiquitin-40S ribosomal protein S27a

KLLA0E12277p

60S ribosomal protein L41-A

Eukaryotic translation initiation factor 1A

Eukaryotic translation initiation factor 2 subunit alpha

Eukaryotic translation initiation factor 2 subunit gamma

Eukaryotic translation initiation factor 2 subunit beta

Eukaryotic translation initiation factor 5

Eukaryotic translation initiation factor 3 subunit A

Eukaryotic translation initiation factor 3 subunit B

eIF3c,Eukaryotic translation initiation factor 3 subunit C

Eukaryotic translation initiation factor 3 subunit G

Eukaryotic translation initiation factor 3 subunit I

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3j6x.40 | 3j6y.40 | 3j77.41 | 3j78.41 | 3j80.1 | 3j81.1 | 3jam.1 | 3jap.1 | 4u1e.1 | 4u3n.73 | 4u3n.149 | 4u4r.73 | 4u4r.149 | 4u4y.73 | 4u4y.149 | 4u51.73 | 4u51.149 | 4u6f.73 | 4u6f.148 | 4uer.1 | 4v6i.68 | 4v8t.1 | 4v91.1 | 5a5u.1 | 5dc3.73 | 5dc3.149 | 5dge.73 | 5dge.149 | 5gak.1 | 5i4l.73  more...