SMTL ID : 8s8h.1

Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.2)

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
116 x MG: MAGNESIUM ION
3 x ZN: ZINC ION
1 x GCP: PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER
1 x MET: METHIONINE
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Villamayor-Belinchon, L. et al., Structural basis of AUC codon discrimination during translation initiation in yeast. Nucleic Acids Res. (2024)
Release Date
2024-09-11
Peptides
Small ribosomal subunit protein uS2: B
Small ribosomal subunit protein eS1: C
Small ribosomal subunit protein uS5: D
40S ribosomal protein S4: E
Small ribosomal subunit protein eS6: F
40S ribosomal protein S7: G
40S ribosomal protein S8: H
KLLA0E23673p: I
KLLA0A10483p: J
KLLA0F18040p: K
Small ribosomal subunit protein uS11: L
40S ribosomal protein S21: M
Small ribosomal subunit protein uS8: N
KLLA0B11231p: O
40S ribosomal protein S24: P
40S ribosomal protein S26: Q
40S ribosomal protein S27: R
40S ribosomal protein S30: S
40S ribosomal protein L41-A: T
40S ribosomal protein S3: U
KLLA0D10659p: V
KLLA0B08173p: W
40S ribosomal protein S12: X
KLLA0F07843p: Y
Small ribosomal subunit protein uS9: Z
KLLA0B01474p: 0
KLLA0B01562p: 1
KLLA0A07194p: 2
Small ribosomal subunit protein uS10: 3
40S ribosomal protein S25: 4
Small ribosomal subunit protein eS28: 5
Small ribosomal subunit protein uS14: 6
Small ribosomal subunit protein eS31: 7
KLLA0E12277p: 8
Eukaryotic translation initiation factor 1A: 9
Eukaryotic translation initiation factor 2 subunit alpha: c
Eukaryotic translation initiation factor 2 subunit gamma: d
Eukaryotic translation initiation factor 2 subunit beta: e
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
B
A
C
B
D
C
E
E
F
G
G
H
H
I
I
J
J
L
K
N
L
O
M
V
N
W
O
X
P
Y
Q
a
R
b
S
e
T
h
U
D
V
F
W
K
X
M
Y
P
Z
Q
0
R
1
S
2
T
3
U
4
Z
5
c
6
d
7
f
8
g
9
i
c
j
d
k
e
l

Small ribosomal subunit protein uS2

Small ribosomal subunit protein eS1

Small ribosomal subunit protein uS5

40S ribosomal protein S4

Small ribosomal subunit protein eS6

40S ribosomal protein S7

40S ribosomal protein S8

KLLA0E23673p

KLLA0A10483p

KLLA0F18040p

Small ribosomal subunit protein uS11

40S ribosomal protein S21

Small ribosomal subunit protein uS8

KLLA0B11231p

40S ribosomal protein S24

40S ribosomal protein S26

40S ribosomal protein S27

40S ribosomal protein S30

40S ribosomal protein L41-A

40S ribosomal protein S3

KLLA0D10659p

KLLA0B08173p

40S ribosomal protein S12

KLLA0F07843p

Small ribosomal subunit protein uS9

KLLA0B01474p

KLLA0B01562p

KLLA0A07194p

Small ribosomal subunit protein uS10

40S ribosomal protein S25

Small ribosomal subunit protein eS28

Small ribosomal subunit protein uS14

Small ribosomal subunit protein eS31

KLLA0E12277p

Eukaryotic translation initiation factor 1A

Eukaryotic translation initiation factor 2 subunit alpha

Eukaryotic translation initiation factor 2 subunit gamma

Eukaryotic translation initiation factor 2 subunit beta

Related Entries With Identical Sequence

3j6x.40 | 3j6y.40 | 3j77.41 | 3j78.41 | 3j80.1 | 3j81.1 | 3jam.1 | 3jap.1 | 4u3n.73 | 4u3n.149 | 4u4r.73 | 4u4r.149 | 4u4y.73 | 4u4y.149 | 4u51.73 | 4u51.149 | 4u6f.73 | 4u6f.148 | 4v6i.68 | 4v8t.1 | 4v91.1 | 5dc3.73 | 5dc3.149 | 5dge.73 | 5dge.149 | 5gak.1 | 5i4l.73 | 5i4l.149 | 5it7.39 | 5it7.66  more...