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SMTL ID : 8cah.1

Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-2-1-1-1-1-1-mer
Ligands
80 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
2 x ZN: ZINC ION(Non-covalent)
2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Ikeuchi, K. et al., Molecular basis for recognition and deubiquitination of 40S ribosomes by Otu2. Nat Commun (2023)
Release Date
2023-05-24
Peptides
Eukaryotic translation initiation factor 3 subunit I: A
Eukaryotic translation initiation factor 3 subunit G: B
Eukaryotic translation initiation factor 3 subunit A: C
Eukaryotic translation initiation factor 3 subunit B: D
Eukaryotic translation initiation factor 3 subunit C: E
Eukaryotic translation initiation factor 4C: F
SUI1 isoform 1: G
RNA recognition motif (unknown): H
40S ribosomal protein S0-A: J
40S ribosomal protein S1-A: K
40S ribosomal protein S2: L
40S ribosomal protein S4-B: M
40S ribosomal protein S6-B: N
40S ribosomal protein S8-A: O
40S ribosomal protein S9-A: P
40S ribosomal protein S11-A: Q
40S ribosomal protein S13: R
40S ribosomal protein S14-A: S
40S ribosomal protein S21-A: T
40S ribosomal protein S22-A: U
40S ribosomal protein S23-A: V
40S ribosomal protein S24-A: W
40S ribosomal protein S26-A: X
40S ribosomal protein S27-A: Y
40S ribosomal protein S30-A: Z
RPS15 isoform 1: 0
40S ribosomal protein S3: 1
40S ribosomal protein S5: 2
40S ribosomal protein S10-A: 3
40S ribosomal protein S12: 4
40S ribosomal protein S16-A: 5
40S ribosomal protein S17-A: 6
40S ribosomal protein S18-A: 7
40S ribosomal protein S19-A: 8
40S ribosomal protein S20: 9
40S ribosomal protein S25-A: a
RPS29A isoform 1: b
40S ribosomal protein S31: c
Guanine nucleotide-binding protein subunit beta-like protein: d
40S ribosomal protein S28-A: e
Eukaryotic translation initiation factor 3 subunit J: fg
RLI1 isoform 1: h
60S ribosomal protein L40-A: i
60S ribosomal protein L41-A: j
OTU domain-containing protein 2: k
40S ribosomal protein S7-A: l
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
l
B
r
C
o
D
p
E
q
F
i
G
m
H
j
J
P
K
Q
L
R
M
S
N
T
O
V
P
W
Q
X
R
Y
S
Z
T
a
U
b
V
c
W
d
X
e
Y
f
Z
g
0
E
1
A
2
B
3
C
4
D
5
F
6
H
7
I
8
J
9
K
a
L
b
M
c
N
d
O
e
h
f
z
g
y
h
x
i
k
j
n
k
G
l
U

Eukaryotic translation initiation factor 3 subunit I

Eukaryotic translation initiation factor 3 subunit G

Eukaryotic translation initiation factor 3 subunit A

Eukaryotic translation initiation factor 3 subunit B

Eukaryotic translation initiation factor 3 subunit C

Eukaryotic translation initiation factor 4C

SUI1 isoform 1

RNA recognition motif (unknown)

40S ribosomal protein S0-A

40S ribosomal protein S1-A

40S ribosomal protein S2

40S ribosomal protein S4-B

40S ribosomal protein S6-B

40S ribosomal protein S8-A

40S ribosomal protein S9-A

40S ribosomal protein S11-A

40S ribosomal protein S13

40S ribosomal protein S14-A

40S ribosomal protein S21-A

40S ribosomal protein S22-A

40S ribosomal protein S23-A

40S ribosomal protein S24-A

40S ribosomal protein S26-A

40S ribosomal protein S27-A

40S ribosomal protein S30-A

RPS15 isoform 1

40S ribosomal protein S3

40S ribosomal protein S5

40S ribosomal protein S10-A

40S ribosomal protein S12

40S ribosomal protein S16-A

40S ribosomal protein S17-A

40S ribosomal protein S18-A

40S ribosomal protein S19-A

40S ribosomal protein S20

40S ribosomal protein S25-A

RPS29A isoform 1

40S ribosomal protein S31

Guanine nucleotide-binding protein subunit beta-like protein

40S ribosomal protein S28-A

Eukaryotic translation initiation factor 3 subunit J

RLI1 isoform 1

60S ribosomal protein L40-A

60S ribosomal protein L41-A

OTU domain-containing protein 2

40S ribosomal protein S7-A

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