SMTL ID : 6gd9.1

Cytochrome c in complex with Sulfonato-calix[8]arene, P43212 form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

monomer

Ligands

1 x HEC: HEME C(Covalent)

HEC.1: 25 residues within 4Å: Chain A: R.18, C.19, C.22, H.23, V.33, G.34, P.35, L.37, I.40, S.45, G.46, Y.51, Y.53, T.54, N.57, W.64, M.69, Y.72, L.73, T.83, K.84, M.85, F.87, L.99, L.103 21 PLIP interactions: 21 interactions with chain A, Hydrophobic interactions: A:V.33, A:L.37, A:I.40, A:Y.51, A:W.64, A:L.73, A:M.85, A:F.87, A:L.99, A:L.103 Hydrogen bonds: A:G.46, A:T.54, A:N.57, A:T.83, A:T.83, A:K.84 Water bridges: A:Q.47, A:A.48 Salt bridges: A:K.84 pi-Stacking: A:Y.72 Metal complexes: A:H.23

3 x EVB: sulfonato-calix[8]arene(Non-covalent)

EVB.2: 11 residues within 4Å: Chain A: K.16, T.17, L.20, Q.21, T.24, G.29, P.30, H.31, K.32 Ligands: EPE.5, EPE.6 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.20, A:L.20, A:L.20, A:L.20, A:Q.21, A:Q.21, A:T.24, A:P.30, A:P.30, A:P.30 Hydrogen bonds: A:L.20, A:Q.21, A:K.32, A:K.32, A:K.32 Water bridges: A:K.32 EVB.3: 12 residues within 4Å: Chain A: A.5, G.6, A.8, K.9, A.12, T.101, Y.102, K.105, E.108 Ligands: EPE.5, EPE.7, EPE.8 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:A.5, A:K.9, A:A.12, A:T.101, A:Y.102, A:Y.102, A:K.105, A:K.105 Hydrogen bonds: A:G.6, A:A.8, A:E.108 Water bridges: A:G.6, A:K.104 Salt bridges: A:K.9, A:K.105, A:K.105 EVB.4: 12 residues within 4Å: Chain A: R.18, T.74, N.75, K.77, K.78, P.81, F.87, G.88, G.89, L.90, K.91, K.92 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:K.77, A:K.78, A:K.78, A:K.91, A:K.91 Hydrogen bonds: A:N.75, A:G.82, A:G.88, A:K.91 Water bridges: A:K.77 Salt bridges: A:R.18, A:R.18, A:K.77, A:K.78, A:K.91 pi-Cation interactions: A:K.91

4 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.5: 9 residues within 4Å: Chain A: A.12, K.16, L.20, T.24, V.25, E.26, Y.102 Ligands: EVB.2, EVB.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.25, A:E.26, A:E.26 EPE.6: 3 residues within 4Å: Chain A: K.32, V.33 Ligands: EVB.2 No protein-ligand interaction detected (PLIP) EPE.7: 1 residues within 4Å: Ligands: EVB.3 No protein-ligand interaction detected (PLIP) EPE.8: 1 residues within 4Å: Ligands: EVB.3 No protein-ligand interaction detected (PLIP)

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.9: 2 residues within 4Å: Chain A: T.54, D.55 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.55 Water bridges: A:A.56 SO4.10: 4 residues within 4Å: Chain A: K.91, K.92, E.93, R.96 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.93, A:E.93 Water bridges: A:K.94, A:K.94 SO4.11: 1 residues within 4Å: Chain A: K.60 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rennie, M.L. et al., Auto-regulated Protein Assembly on a Supramolecular Scaffold. Angew. Chem. Int. Ed. Engl. (2018)

Release Date

2018-08-29

Peptides

Cytochrome c iso-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome c iso-1

Related Entries With Identical Sequence