6gvn.2 | SWISS-MODEL Template Library

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SMTL ID : 6gvn.2 (1 other biounit)

Tubulin:TM-3 DARPin complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.69 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.1:

23 residues within 4Å:

Chain A: G.10, Q.11, C.12, Q.15, A.97, G.98, N.99, S.138, G.141, G.142, T.143, G.144, V.169, P.171, V.175, S.176, E.181, N.204, L.207, Y.222, L.225, N.226
Ligands: MG.2

23 PLIP interactions:

23 interactions with chain A

Hydrogen bonds: A:Q.11, A:C.12, A:A.97, A:A.97, A:N.99, A:N.100, A:S.138, A:G.142, A:T.143, A:G.144, A:E.181, A:N.204, A:N.204, A:N.226, A:N.226
Water bridges: A:G.13, A:N.99, A:G.140, A:G.141, A:S.145, A:S.176
pi-Stacking: A:Y.222, A:Y.222

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2:

2 residues within 4Å:

Chain A: Q.11
Ligands: GTP.1

No protein-ligand interaction detected (PLIP)

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.3:

8 residues within 4Å:

Chain A: R.156, P.160, D.161, R.162, M.164, N.195, D.197, R.251

2 PLIP interactions:

2 interactions with chain A

Salt bridges: A:D.197, A:R.251

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4:	4 residues within 4Å: Chain A: T.178, V.180, F.394, W.397 No protein-ligand interaction detected (PLIP)
GOL.5:	5 residues within 4Å: Chain A: D.177 Chain B: I.90, G.91, H.125, E.127 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.127

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Campanacci, V. et al., Insight into microtubule nucleation from tubulin-capping proteins. Proc.Natl.Acad.Sci.USA (2019)

Release Date

2019-04-24

Peptides

Tubulin beta chain: A
TM-3 DARPIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
F

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Tubulin beta chain

TM-3 DARPIN

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