SMTL ID : 5jcb.1

Microtubule depolymerizing agent podophyllotoxin derivative YJTSF1

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.30 Å
Oligo State
hetero-oligomer
Ligands
2 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
7 x MG: MAGNESIUM ION(Non-covalent)
8 x GOL: GLYCEROL(Non-functional Binders)
2 x IMD: IMIDAZOLE(Non-covalent)
2 x CA: CALCIUM ION(Non-covalent)
2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
2 x NA: SODIUM ION(Non-functional Binders)
1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
2 x NV4: (5R,5aR,8aS,9R)-9-[(4H-1,2,4-triazol-3-yl)sulfanyl]-5-(3,4,5-trimethoxyphenyl)-5,8,8a,9-tetrahydro-2H-furo[3',4':6,7]naphtho[2,3-d][1,3]dioxol-6(5aH)-one(Non-covalent)
1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
1 x ACP: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER(Non-covalent)
Links
RCSB   PDBe   PDBj   PDBsum   CATH   PLIP
Citation
Zhao, W. et al., Structural Insights into the Inhibition of Tubulin by the Antitumor Agent 4 beta-(1,2,4-triazol-3-ylthio)-4-deoxypodophyllotoxin. ACS Chem. Biol. (2017)
Release Date
2017-09-27
Peptides
Tubulin alpha-1B chain: AC
Tubulin beta chain: BD
Stathmin: E
Tubulin-Tyrosine Ligase: F
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
C
C
B
B
D
D
E
E
F
F

Tubulin alpha-1B chain

Tubulin beta chain

Stathmin

Tubulin-Tyrosine Ligase

Related Entries With Identical Sequence

3j8x.1 | 3j8y.1 | 3jak.1 | 3jal.1 | 3jar.1 | 3jas.1 | 3jat.1 | 3jaw.1 | 3ryc.1 | 3ryf.1 | 3ryh.1 | 3ryi.1 | 3ut5.1 | 4eb6.1 | 4f61.1 | 4f6r.1 | 4hna.1 | 4i4t.1 | 4i50.1 | 4i55.1 | 4ihj.1 | 4iij.1 | 4lnu.1 | 4o2a.1 | 4o2b.1 | 4o4h.1 | 4o4i.1 | 4o4j.1 | 4o4l.1 | 4tuy.1  more...