- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 2 residues within 4Å:- Chain A: D.148
- Ligands: ATP.1
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.148, H2O.1
MG.4: 3 residues within 4Å:- Chain A: D.71, K.92
- Ligands: ATP.1
5 PLIP interactions:1 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:D.71, H2O.1, H2O.1, H2O.1, H2O.3
MG.9: 2 residues within 4Å:- Chain B: D.148
- Ligands: ATP.8
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:D.148
MG.11: 3 residues within 4Å:- Chain B: D.71, K.92
- Ligands: ATP.8
3 PLIP interactions:1 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.71, H2O.2, H2O.4
- 2 x ZN: ZINC ION(Non-covalent)
ZN.3: 4 residues within 4Å:- Chain A: C.191, C.194, C.268, C.273
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:C.191, A:C.194, A:C.268, A:C.273
ZN.10: 4 residues within 4Å:- Chain B: C.191, C.194, C.268, C.273
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:C.191, B:C.194, B:C.268, B:C.273
- 8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 5 residues within 4Å:- Chain A: N.175, D.205, E.206, K.207, T.208
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:N.175, A:D.205, A:K.207, A:T.208, A:T.208
EDO.6: 5 residues within 4Å:- Chain A: P.266, R.274, Q.277, E.278, K.281
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.277, A:K.281
EDO.7: 4 residues within 4Å:- Chain A: M.154, N.157, T.158, D.270
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:M.154, A:N.157, A:D.270
- Water bridges: A:D.269
EDO.12: 6 residues within 4Å:- Chain A: Q.84
- Chain B: H.86, Q.87, H.98, T.99, N.102
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:T.99
EDO.13: 3 residues within 4Å:- Chain B: F.237, L.238, N.240
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.240
EDO.14: 2 residues within 4Å:- Chain B: T.117, F.122
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:T.117
EDO.15: 5 residues within 4Å:- Chain B: T.243, V.244, S.245, F.246, M.260
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.245, B:F.246
EDO.16: 1 residues within 4Å:- Chain B: G.164
2 PLIP interactions:2 interactions with chain B- Water bridges: B:L.163, B:G.164
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Soudah, N. et al., An N-Terminal Extension to UBA5 Adenylation Domain Boosts UFM1 Activation: Isoform-Specific Differences in Ubiquitin-like Protein Activation. J.Mol.Biol. (2019)
- Release Date
- 2018-10-31
- Peptides
- Ubiquitin-like modifier-activating enzyme 5: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 2 x ZN: ZINC ION(Non-covalent)
- 8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Soudah, N. et al., An N-Terminal Extension to UBA5 Adenylation Domain Boosts UFM1 Activation: Isoform-Specific Differences in Ubiquitin-like Protein Activation. J.Mol.Biol. (2019)
- Release Date
- 2018-10-31
- Peptides
- Ubiquitin-like modifier-activating enzyme 5: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B