- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 2 residues within 4Å:- Chain A: D.148
- Ligands: ATP.1
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.148, H2O.1
MG.4: 3 residues within 4Å:- Chain A: D.71, K.92
- Ligands: ATP.1
5 PLIP interactions:1 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:D.71, H2O.1, H2O.1, H2O.2, H2O.2
MG.9: 2 residues within 4Å:- Chain B: D.148
- Ligands: ATP.8
2 PLIP interactions:1 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.148, H2O.3
MG.11: 5 residues within 4Å:- Chain B: D.71, K.72, N.77, K.92
- Ligands: ATP.8
3 PLIP interactions:1 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.71, H2O.3, H2O.4
- 2 x ZN: ZINC ION(Non-covalent)
ZN.3: 4 residues within 4Å:- Chain A: C.191, C.194, C.268, C.273
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:C.191, A:C.194, A:C.268, A:C.273
ZN.10: 4 residues within 4Å:- Chain B: C.191, C.194, C.268, C.273
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:C.191, B:C.194, B:C.268, B:C.273
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 4 residues within 4Å:- Chain A: P.266, R.274, E.278, K.281
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:P.266, A:K.281, A:K.281
EDO.6: 2 residues within 4Å:- Chain A: Q.123, H.124
No protein-ligand interaction detected (PLIP)EDO.12: 3 residues within 4Å:- Chain B: L.90, Q.94, H.98
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Q.94
EDO.13: 4 residues within 4Å:- Chain B: N.161, E.162, N.272, K.275
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.162, B:Q.276
EDO.14: 3 residues within 4Å:- Chain B: P.139, V.140, D.141
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:D.141, B:D.141
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Soudah, N. et al., An N-Terminal Extension to UBA5 Adenylation Domain Boosts UFM1 Activation: Isoform-Specific Differences in Ubiquitin-like Protein Activation. J.Mol.Biol. (2019)
- Release Date
- 2018-10-31
- Peptides
- Ubiquitin-like modifier-activating enzyme 5: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
KB
L
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 2 x ZN: ZINC ION(Non-covalent)
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Soudah, N. et al., An N-Terminal Extension to UBA5 Adenylation Domain Boosts UFM1 Activation: Isoform-Specific Differences in Ubiquitin-like Protein Activation. J.Mol.Biol. (2019)
- Release Date
- 2018-10-31
- Peptides
- Ubiquitin-like modifier-activating enzyme 5: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
KB
L