- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 2 residues within 4Å:- Chain A: D.148
- Ligands: ATP.1
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:D.148
MG.4: 3 residues within 4Å:- Chain A: D.71, K.92
- Ligands: ATP.1
3 PLIP interactions:1 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.71, H2O.1, H2O.1
MG.7: 2 residues within 4Å:- Chain B: D.148
- Ligands: ATP.6
2 PLIP interactions:1 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.148, H2O.2
MG.9: 3 residues within 4Å:- Chain B: D.71, K.92
- Ligands: ATP.6
3 PLIP interactions:1 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.71, H2O.2, H2O.3
- 2 x ZN: ZINC ION(Non-covalent)
ZN.3: 4 residues within 4Å:- Chain A: C.191, C.194, C.268, C.273
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:C.191, A:C.194, A:C.268, A:C.273
ZN.8: 4 residues within 4Å:- Chain B: C.191, C.194, C.268, C.273
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:C.191, B:C.194, B:C.268, B:C.273
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 7 residues within 4Å:- Chain A: S.173, S.178, G.179, H.180, V.199, V.200, A.201
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.178, A:H.180, A:V.200, A:A.201
EDO.10: 6 residues within 4Å:- Chain B: G.48, V.49, C.146, D.148, M.223
- Ligands: ATP.6
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:G.48, B:V.49, B:C.146
- Water bridges: B:G.50
EDO.11: 2 residues within 4Å:- Chain B: Q.94, H.98
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.94
- Water bridges: B:H.98
EDO.12: 4 residues within 4Å:- Chain A: Q.84
- Chain B: H.86, H.98, T.99
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:H.86
- Water bridges: B:Q.84
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Soudah, N. et al., An N-Terminal Extension to UBA5 Adenylation Domain Boosts UFM1 Activation: Isoform-Specific Differences in Ubiquitin-like Protein Activation. J.Mol.Biol. (2019)
- Release Date
- 2018-10-31
- Peptides
- Ubiquitin-like modifier-activating enzyme 5: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 2 x ZN: ZINC ION(Non-covalent)
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Soudah, N. et al., An N-Terminal Extension to UBA5 Adenylation Domain Boosts UFM1 Activation: Isoform-Specific Differences in Ubiquitin-like Protein Activation. J.Mol.Biol. (2019)
- Release Date
- 2018-10-31
- Peptides
- Ubiquitin-like modifier-activating enzyme 5: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D