SMTL ID : 6hh6.1

Human poly(ADP-ribose) glycohydrolase in complex with ADP-HPM

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x A3R: Adenosine Diphosphate (Hydroxymethyl)pyrrolidine monoalcohol(Non-covalent)

A3R.1: 20 residues within 4Å: Chain A: T.280, I.281, E.282, F.293, A.294, N.295, G.300, V.308, Q.309, E.310, E.311, Y.347, Y.350, N.424, G.426, C.427, G.428, A.429, F.430, F.457 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:N.295, A:F.430 Hydrogen bonds: A:I.281, A:E.282, A:N.295, A:Q.309, A:E.310, A:Y.347, A:Y.350, A:N.424, A:G.426, A:G.428, A:A.429, A:F.430 Water bridges: A:N.295, A:Q.309, A:E.310, A:Y.350, A:N.424, A:T.456, A:F.457 pi-Stacking: A:F.457

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: R.90, Y.119, P.198, R.199, N.201 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.199, A:N.201, A:N.201 Water bridges: A:R.90, A:R.199 Salt bridges: A:R.90, A:R.199 SO4.3: 3 residues within 4Å: Chain A: W.61, K.67, R.199 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.61 Water bridges: A:R.199 Salt bridges: A:R.199 SO4.4: 7 residues within 4Å: Chain A: Y.76, R.90, L.93, K.114, Y.115, N.116, V.117 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.114, A:V.117 Water bridges: A:A.118 Salt bridges: A:R.90 SO4.5: 3 residues within 4Å: Chain A: R.30, S.32, A.33 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.33 Water bridges: A:S.32 Salt bridges: A:R.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rack, J.G.M. et al., (ADP-ribosyl)hydrolases: Structural Basis for Differential Substrate Recognition and Inhibition. Cell Chem Biol (2018)

Release Date

2018-11-28

Peptides

Poly(ADP-ribose) glycohydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Poly(ADP-ribose) glycohydrolase

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