SMTL ID : 6hmm.1

POLYADPRIBOSYL GLYCOHYDROLASE IN COMPLEX WITH PDD00013907

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 4 residues within 4Å: Chain A: Y.57, C.70, E.72, P.160 No protein-ligand interaction detected (PLIP)

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: P.31, V.37, I.39, R.40, V.41, F.53 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.39, A:V.41, A:D.42 Water bridges: A:Q.165 GOL.3: 8 residues within 4Å: Chain A: E.264, R.265, C.266, E.267, T.479, G.481, D.482, K.485 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.265, A:D.482 Water bridges: A:E.267, A:D.482

1 x 7JB: ~{N}-~{tert}-butyl-9,10-bis(oxidanylidene)anthracene-2-sulfonamide(Non-covalent)

7JB.4: 10 residues within 4Å: Chain A: T.280, I.281, E.282, Q.309, I.312, R.313, I.316, Y.347, Y.350, F.457 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:T.280, A:R.313, A:I.316, A:Y.347, A:Y.350, A:Y.350 Hydrogen bonds: A:I.281, A:Q.309, A:Y.347 pi-Stacking: A:Y.350, A:F.457

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 2 residues within 4Å: Chain A: R.496, N.497 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.497 Water bridges: A:R.496, A:R.496, A:R.496 Salt bridges: A:R.496 SO4.6: 3 residues within 4Å: Chain A: W.61, K.67, R.199 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.61 Salt bridges: A:K.67, A:R.199 SO4.7: 7 residues within 4Å: Chain A: Y.76, R.90, L.93, K.114, Y.115, N.116, V.117 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.115, A:V.117 Water bridges: A:A.118, A:A.118 Salt bridges: A:R.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Waszkowycz, B. et al., Cell-Active Small Molecule Inhibitors of the DNA-Damage Repair Enzyme Poly(ADP-ribose) Glycohydrolase (PARG): Discovery and Optimization of Orally Bioavailable Quinazolinedione Sulfonamides. J.Med.Chem. (2018)

Release Date

2018-11-14

Peptides

Poly(ADP-ribose) glycohydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Poly(ADP-ribose) glycohydrolase

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