SMTL ID : 6hmn.1

POLYADPRIBOSYL GLYCOSIDASE IN COMPLEX WITH PDD00014909

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.87 Å

Oligo State

monomer

Ligands

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 6 residues within 4Å: Chain A: P.31, I.39, R.40, V.41, D.42, F.53 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.41 Salt bridges: A:D.42 pi-Cation interactions: A:F.53

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: E.264, R.265, C.266, E.267, T.479, G.481, D.482, K.485 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.482

1 x 70J: 3-methyl-6-[[(1-methylcyclopropyl)amino]-bis(oxidanyl)-$l^{4}-sulfanyl]-1-(phenylmethyl)quinazoline-2,4-dione(Non-covalent)

70J.3: 12 residues within 4Å: Chain A: T.280, I.281, E.282, F.293, Q.309, I.312, R.313, I.316, Y.347, Y.350, F.457, G.458 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:T.280, A:R.313, A:Y.350 Hydrogen bonds: A:I.281, A:E.282, A:Q.309, A:Y.350 pi-Stacking: A:Y.350, A:F.457, A:F.457

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 7 residues within 4Å: Chain A: Y.76, R.90, L.93, K.114, Y.115, N.116, V.117 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.115, A:V.117 Salt bridges: A:R.90 SO4.5: 1 residues within 4Å: Chain A: R.496 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.496

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Waszkowycz, B. et al., Cell-Active Small Molecule Inhibitors of the DNA-Damage Repair Enzyme Poly(ADP-ribose) Glycohydrolase (PARG): Discovery and Optimization of Orally Bioavailable Quinazolinedione Sulfonamides. J.Med.Chem. (2018)

Release Date

2018-11-14

Peptides

Poly(ADP-ribose) glycohydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Poly(ADP-ribose) glycohydrolase

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