SMTL ID : 6i5h.1

Crystal structure of CLK1 in complex with furanopyrimidin VN412

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.49 Å

Oligo State

monomer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 1 residues within 4Å: Chain A: K.336 No protein-ligand interaction detected (PLIP) EDO.2: 5 residues within 4Å: Chain A: D.187, H.191, S.212, Q.213 Ligands: GOL.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.187 Water bridges: A:T.140 EDO.4: 7 residues within 4Å: Chain A: F.106, I.107, N.110, L.113, P.114, F.115, R.169 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.106, A:N.110 Water bridges: A:R.116 EDO.5: 4 residues within 4Å: Chain A: S.102, D.105, E.147 Ligands: H3N.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.102 EDO.6: 6 residues within 4Å: Chain A: P.114, F.115, R.116, L.117, Y.228, L.296 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.117, A:Y.228

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: S.212, Q.213, P.214, T.322 Ligands: EDO.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.212, A:S.212 Water bridges: A:H.135

1 x H3N: 5-(1-methylpyrazol-4-yl)-3-(3-phenoxyphenyl)furo[3,2-b]pyridine(Non-covalent)

H3N.7: 17 residues within 4Å: Chain A: L.22, G.23, E.24, F.27, V.30, A.44, K.46, F.96, E.97, L.98, L.99, G.100, E.147, L.150, V.179, D.180 Ligands: EDO.5 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.22, A:L.22, A:F.27, A:F.27, A:V.30, A:A.44, A:F.96, A:F.96, A:L.150, A:V.179 Hydrogen bonds: A:D.180 Water bridges: A:E.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nemec, V. et al., Furo[3,2-b]pyridine: A Privileged Scaffold for Highly Selective Kinase Inhibitors and Effective Modulators of the Hedgehog Pathway. Angew. Chem. Int. Ed. Engl. (2019)

Release Date

2019-01-16

Peptides

Dual specificity protein kinase CLK1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dual specificity protein kinase CLK1

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