SMTL ID : 6i5i.1

Crystal structure of CLK1 in complexed with furo[3,2-b]pyridine compound 12h

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x H3E: 5-(1-methylpyrazol-4-yl)-3-[1-(phenylmethyl)pyrazol-4-yl]furo[3,2-b]pyridine(Non-covalent)

H3E.1: 17 residues within 4Å: Chain A: L.22, G.23, E.24, F.27, V.30, A.44, K.46, F.96, E.97, L.98, L.99, G.100, E.147, N.148, L.150, V.179, D.180 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.22, A:F.27, A:A.44, A:F.96, A:F.96, A:L.150, A:V.179 Hydrogen bonds: A:K.46, A:D.180 Water bridges: A:S.102, A:F.181

12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: E.87, H.88, H.89 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.87, A:H.89 Water bridges: A:G.90, A:G.90 EDO.3: 3 residues within 4Å: Chain A: S.75, R.78, K.177 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.177 Water bridges: A:K.177 EDO.4: 3 residues within 4Å: Chain A: R.15, L.83, E.84 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.15, A:R.15 Water bridges: A:D.35, A:D.35 EDO.5: 6 residues within 4Å: Chain A: L.98, L.99, V.152, Q.153, S.154 Ligands: EDO.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.153, A:S.154 EDO.6: 6 residues within 4Å: Chain A: L.22, L.99, G.100, L.101, S.154 Ligands: EDO.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.99, A:S.154 EDO.7: 7 residues within 4Å: Chain A: F.106, I.107, N.110, L.113, P.114, F.115, R.169 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.106, A:N.110 Water bridges: A:R.116 EDO.8: 7 residues within 4Å: Chain A: P.114, F.115, R.116, L.117, Y.228, L.296 Ligands: EDO.9 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.117, A:Y.228 EDO.9: 3 residues within 4Å: Chain A: P.114, R.116 Ligands: EDO.8 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.114 EDO.10: 5 residues within 4Å: Chain A: L.117, D.118, R.121, E.301, L.334 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.121, A:R.121 Water bridges: A:D.118 EDO.11: 4 residues within 4Å: Chain A: M.295, L.296, S.297, Q.298 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.298 Water bridges: A:L.296 EDO.12: 4 residues within 4Å: Chain A: W.274, D.275, S.278, A.280 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.275 EDO.13: 3 residues within 4Å: Chain A: C.55, E.56, R.59 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.59, A:R.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nemec, V. et al., Furo[3,2-b]pyridine: A Privileged Scaffold for Highly Selective Kinase Inhibitors and Effective Modulators of the Hedgehog Pathway. Angew. Chem. Int. Ed. Engl. (2019)

Release Date

2019-01-09

Peptides

Dual specificity protein kinase CLK1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dual specificity protein kinase CLK1

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