SMTL ID : 6ijs.1

Human PPARgamma ligand binding domain complexed with SB1494

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

hetero-1-1-mer

Ligands

1 x A9F: N-{[3-({[(1R,2S)-2-{[(2E)-2-cyano-4,4-dimethylpent-2-enoyl]amino}cyclopentyl]oxy}methyl)phenyl]methyl}-4-[(4-methylpiperazin-1-yl)methyl]benzamide(Covalent)

A9F.1: 23 residues within 4Å: Chain A: F.23, A.75, I.78, F.79, C.82, Q.83, R.85, S.86, A.89, I.123, Y.124, M.126, L.127, L.130, I.138, M.145, L.150, L.153, F.157, F.160, M.161, H.246, Y.270 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:I.78, A:F.79, A:F.79, A:Q.83, A:R.85, A:I.123, A:L.127, A:L.127, A:I.138, A:L.153, A:F.157 Hydrogen bonds: A:Y.124, A:H.246 Water bridges: A:S.86 Salt bridges: A:E.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jang, J.Y. et al., Structural basis for the inhibitory effects of a novel reversible covalent ligand on PPAR gamma phosphorylation. Sci Rep (2019)

Release Date

2019-10-16

Peptides

Peroxisome proliferator-activated receptor gamma: A
16-mer peptide from Nuclear receptor coactivator 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

16-mer peptide from Nuclear receptor coactivator 1

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