SMTL ID : 6muf.1

Crystal Structure of HIV-1 B41 SOSIP.664 Prefusion Env Trimer in Complex with Human Antibodies 3H109L and 35O22 at 3.4 Angstrom

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.91 Å
Oligo State
hetero-3-3-3-3-3-3-mer
Ligands
3 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
3 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
3 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
33 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Lai, Y.T. et al., Lattice engineering enables definition of molecular features allowing for potent small-molecule inhibition of HIV-1 entry. Nat Commun (2019)
Release Date
2019-01-16
Peptides
Envelope glycoprotein gp160: AGM
35O22 scFv heavy chain portion: BHN
35O22 scFv light chain portion: CIO
Envelope glycoprotein gp160: DJP
3H109L Fab heavy chain: EKQ
3H109L Fab light chain: FLR
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
B
G
B
M
B
B
D
H
D
N
D
C
E
I
E
O
E
D
G
J
G
P
G
E
H
K
H
Q
H
F
L
L
L
R
L

Envelope glycoprotein gp160

Toggle Identical (AGM)

35O22 scFv heavy chain portion

Toggle Identical (BHN)

35O22 scFv light chain portion

Toggle Identical (CIO)

Envelope glycoprotein gp160

Toggle Identical (DJP)

3H109L Fab heavy chain

Toggle Identical (EKQ)

3H109L Fab light chain

Toggle Identical (FLR)

Related Entries With Identical Sequence

5vn3.1 | 5vn8.1 | 6ch9.1 | 6ck9.1 | 6edu.1 | 6mtj.1 | 6mtn.1 | 6mu6.1 | 6mu7.1 | 6mu8.1 | 6mug.1 | 6nm6.1 | 6nnf.1 | 6nnj.1 | 6okp.1 | 6opn.1 | 6opo.1 | 6opp.1 | 6opq.1 | 6u59.1 | 6vzi.1 | 6w03.1 | 6wix.1 | 6x5b.1 | 6x5c.1 | 8d5c.1