SMTL ID : 6oen.1

Cryo-EM structure of mouse RAG1/2 PRC complex (DNA1)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.727, L.729, C.730, H.937, H.942 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:C.727, A:C.730, A:H.937, A:H.942, A:H.942 ZN.3: 4 residues within 4Å: Chain B: C.727, C.730, H.937, H.942 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.727, B:C.730, B:H.937, B:H.942

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 3 residues within 4Å: Chain A: D.600, G.601 Chain G: A.32 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, X. et al., Cutting antiparallel DNA strands in a single active site. Nat.Struct.Mol.Biol. (2020)

Release Date

2020-01-29

Peptides

V(D)J recombination-activating protein 1: AB
V(D)J recombination-activating protein 2: CD
High mobility group protein B1: IJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
B

D
D

I
N

J
H

V(D)J recombination-activating protein 1

V(D)J recombination-activating protein 2

High mobility group protein B1

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