SMTL ID : 6oeo.1

Cryo-EM structure of mouse RAG1/2 NFC complex (DNA1)

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-1-mer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.600, D.708 Chain F: A.20, C.21 Ligands: CA.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.600, A:D.708 CA.2: 6 residues within 4Å: Chain A: D.600, G.601, Q.962 Chain F: C.21, A.22 Ligands: CA.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.600 CA.4: 5 residues within 4Å: Chain C: D.600, D.708 Chain H: A.20, C.21 Ligands: CA.5 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.600, C:D.708 CA.5: 5 residues within 4Å: Chain C: D.600, G.601, Q.962 Chain H: C.21 Ligands: CA.4 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:D.600

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: C.727, C.730, H.937, H.942 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.727, A:C.730, A:H.937, A:H.942 ZN.6: 4 residues within 4Å: Chain C: C.727, C.730, H.937, H.942 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.727, C:C.730, C:H.937, C:H.942

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, X. et al., Cutting antiparallel DNA strands in a single active site. Nat.Struct.Mol.Biol. (2020)

Release Date

2020-01-29

Peptides

V(D)J recombination-activating protein 1: AC
V(D)J recombination-activating protein 2: BD
High mobility group protein B1: I

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

I
N

V(D)J recombination-activating protein 1

V(D)J recombination-activating protein 2

High mobility group protein B1

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