SMTL ID : 6pvs.1 (3 other biounits)

Structure of Nicotinamide N-Methyltransferase (NNMT) in complex with inhibitor LL320

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.58 Å

Oligo State

monomer

Ligands

1 x P0V: 9-(5-{[(3R)-3-amino-3-carboxypropyl][3-(3-carbamoylphenyl)prop-2-yn-1-yl]amino}-5-deoxy-alpha-D-lyxofuranosyl)-9H-purin-6-amine(Non-covalent)

P0V.1: 33 residues within 4Å: Chain A: K.27, Y.30, F.34, Y.39, Y.43, Y.44, G.82, S.83, G.84, T.86, Y.88, Q.89, D.104, Y.105, S.106, N.109, C.160, D.161, V.162, T.163, T.182, L.183, C.184, D.186, A.187, A.188, D.216, S.220, Y.222, Y.223, S.232, Y.261, A.266 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:Y.39, A:L.183, A:Y.223, A:Y.223, A:Y.261 Hydrogen bonds: A:Y.44, A:T.86, A:T.86, A:Y.88, A:Y.105, A:S.106, A:N.109, A:D.161, A:V.162, A:T.182, A:T.182, A:S.220, A:S.232, A:S.232 Water bridges: A:A.217 pi-Stacking: A:Y.30, A:Y.223

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, D. et al., Novel Propargyl-Linked Bisubstrate Analogues as Tight-Binding Inhibitors for NicotinamideN-Methyltransferase. J.Med.Chem. (2019)

Release Date

2019-11-27

Peptides

NNMT protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NNMT protein

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