SMTL ID : 7sok.1 (3 other biounits)

Structure of Nicotinamide N-Methyltransferase (NNMT) in complex with inhibitor II329

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

monomer

Ligands

1 x 9XL: (2S)-2-amino-4-([3-(3-carbamoylphenyl)prop-2-yn-1-yl]{[(1R,2R,3S,4R)-4-(4-chloro-7H-pyrrolo[2,3-d]pyrimidin-7-yl)-2,3-dihydroxycyclopentyl]methyl}amino)butanoic acid(Non-covalent)

9XL.1: 30 residues within 4Å: Chain A: K.27, Y.30, F.34, Y.39, Y.43, Y.44, G.82, S.83, G.84, T.86, Y.88, D.104, Y.105, S.106, N.109, C.160, D.161, V.162, T.163, T.182, L.183, C.184, D.186, A.188, A.217, S.220, Y.222, Y.223, S.232, Y.261 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:Y.39, A:Y.43, A:Y.105, A:L.183, A:L.183, A:L.183, A:A.188, A:Y.223, A:Y.223, A:Y.261 Hydrogen bonds: A:Y.39, A:Y.105, A:S.106, A:N.109, A:V.162, A:T.182, A:T.182, A:S.220, A:S.232, A:S.232 Water bridges: A:T.182, A:A.187 pi-Stacking: A:Y.30, A:Y.223

5 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 5 residues within 4Å: Chain A: K.27, L.31, Y.105, K.159, D.161 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.27, A:K.27, A:K.159 PEG.3: 7 residues within 4Å: Chain A: N.35, P.36, R.37, Q.108, Q.111, E.112, K.115 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.35, A:N.35, A:R.37, A:Q.111, A:E.112 PEG.4: 4 residues within 4Å: Chain A: E.114, V.157, L.158, K.159 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.114, A:K.159 PEG.5: 5 residues within 4Å: Chain A: A.119, P.144, E.147, E.148, R.151 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.148, A:R.151 PEG.6: 4 residues within 4Å: Chain A: H.50, Q.55, K.58, Y.132 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.50, A:Q.55, A:K.58, A:Y.132, A:Y.132

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Iyamu, I. et al., Structure of Nicotinamide N-Methyltransferase (NNMT) in complex with inhibitor II329. To Be Published

Release Date

2022-11-02

Peptides

NNMT protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

NNMT protein

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