SMTL ID : 7ble.4 (3 other biounits)

Co-crystal structure of Human Nicotinamide N-methyltransferase (NNMT) with the tricyclic inhibitor (3)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.81 Å

Oligo State

monomer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 21 residues within 4Å: Chain A: Y.30, F.34, Y.39, Y.44, G.82, S.83, G.84, T.86, Y.88, Q.89, D.104, Y.105, S.106, N.109, C.160, D.161, V.162, T.182, L.183, C.184 Ligands: U1W.2 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.39 Hydrogen bonds: A:Y.39, A:Y.39, A:Y.44, A:Y.88, A:Q.89, A:Y.105, A:S.106, A:N.109, A:D.161, A:D.161, A:V.162, A:T.182 pi-Stacking: A:Y.30

1 x U1W: 3-ethyl-1,3-diazatricyclo[6.3.1.0^{4,12}]dodeca-4,6,8(12)-trien-2-imine(Non-covalent)

U1W.2: 14 residues within 4Å: Chain A: Y.39, Y.43, Y.44, L.183, D.186, A.187, D.216, A.217, S.220, Y.223, S.232, Y.261, A.266 Ligands: SAH.1 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Y.43, A:L.183, A:D.186, A:A.187, A:A.217, A:Y.223, A:Y.223, A:Y.261, A:Y.261, A:Y.261, A:A.266 Hydrogen bonds: A:L.183 pi-Stacking: A:Y.223 pi-Cation interactions: A:Y.43, A:Y.223

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kannt, A. et al., Novel Inhibitors of Nicotinamide- N -Methyltransferase for the Treatment of Metabolic Disorders. Molecules (2021)

Release Date

2021-03-17

Peptides

Nicotinamide N-methyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Nicotinamide N-methyltransferase

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