SMTL ID : 6rfq.1

Cryo-EM structure of a respiratory complex I assembly intermediate with NDUFAF2

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY 3.30 Å
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
6 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
1 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
10 x 3PE: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE(Non-covalent)
2 x LMN: Lauryl Maltose Neopentyl Glycol(Non-covalent)
4 x CDL: CARDIOLIPIN(Non-covalent)
2 x ZMP: S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] tetradecanethioate(Covalent)
4 x PLC: DIUNDECYL PHOSPHATIDYL CHOLINE(Non-covalent)
3 x T7X: Phosphatidylinositol(Non-covalent)
1 x CPL: 1-PALMITOYL-2-LINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
Links
RCSB   PDBe   PDBj   PDBsum   CATH   PLIP
Citation
Parey, K. et al., High-resolution cryo-EM structures of respiratory complex I: Mechanism, assembly, and disease. Sci Adv (2019)
Release Date
2019-12-11
Peptides
Subunit NUAM of NADH:Ubiquinone Oxidoreductase (Complex I): A
Subunit NUBM of NADH:Ubiquinone Oxidoreductase (Complex I): B
Subunit NUCM of NADH:Ubiquinone Oxidoreductase (Complex I): C
Subunit NIMM of NADH:Ubiquinone Oxidoreductase (Complex I): D
Subunit NUEM of NADH:Ubiquinone Oxidoreductase (Complex I): E
Subunit NUFM of NADH:Ubiquinone Oxidoreductase (Complex I): F
Subunit NUGM of NADH:Ubiquinone Oxidoreductase (Complex I): G
Subunit NUHM of NADH:Ubiquinone Oxidoreductase (Complex I): H
Subunit NUIM of NADH:Ubiquinone Oxidoreductase (Complex I): I
Subunit NUJM of NADH:Ubiquinone Oxidoreductase (Complex I): J
Subunit NUKM of NADH:Ubiquinone Oxidoreductase (Complex I): K
Subunit NULM of NADH:Ubiquinone Oxidoreductase (Complex I): L
Acyl carrier protein ACPM1 of NADH:Ubiquinone Oxidoreductase (Complex I): M
Subunit NB4M of protein NADH:Ubiquinone Oxidoreductase (Complex I): N
Acyl carrier protein ACPM2 of NADH:Ubiquinone Oxidoreductase (Complex I): O
Subunit NI2M of NADH:Ubiquinone Oxidoreductase (Complex I): P
Subunit NESM of NADH:Ubiquinone Oxidoreductase (Complex I): Q
Subunit NUPM of NADH:Ubiquinone Oxidoreductase (Complex I): R
Subunit NB6M of NADH:Ubiquinone Oxidoreductase (Complex I): S
Subunit NUXM of NADH:Ubiquinone Oxidoreductase (Complex I): T
Subunit NUYM of NADH:Ubiquinone Oxidoreductase (Complex I): U
Subunit NUZM of NADH:Ubiquinone Oxidoreductase (Complex I): V
Subunit NIAM of NADH:Ubiquinone Oxidoreductase (Complex I): W
Subunit NEBM of NADH:Ubiquinone Oxidoreductase (Complex I): X
Subunit NB2M of NADH:Ubiquinone Oxidoreductase (Complex I): Y
Subunit NIDM of NADH:Ubiquinone Oxidoreductase (Complex I): Z
Subunit NUVM of NADH:Ubiquinone Oxidoreductase (Complex I): 0
Subunit NI8M of NADH:Ubiquinone Oxidoreductase (Complex I): 1
Subunit NI9M of NADH:Ubiquinone Oxidoreductase (Complex I): 2
Subunit N7BM of NADH:Ubiquinone Oxidoreductase (Complex I): 3
Subunit NUUM of NADH:Ubiquinone Oxidoreductase (Complex I): 4
Subunit N7BML assembly factor: 5
Subunit NUNM of NADH:Ubiquinone Oxidoreductase (Complex I): 6
Subunit NU1M of NADH:Ubiquinone Oxidoreductase (Complex I): 7
Subunit NU2M of NADH:Ubiquinone Oxidoreductase (Complex I): 8
Subunit NU3M of NADH:Ubiquinone Oxidoreductase (Complex I): 9
Subunit NU4M of NADH:Ubiquinone Oxidoreductase (Complex I): a
Subunit NU5M of NADH:Ubiquinone Oxidoreductase (Complex I): b
Subunit NU6M of NADH:Ubiquinone Oxidoreductase (Complex I): c
Subunit NB8M of NADH:Ubiquinone Oxidoreductase (Complex I): d
Subunit NIPM of NADH:Ubiquinone Oxidoreductase (Complex I): e
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D
E
E
F
F
G
G
H
H
I
I
J
J
K
K
L
L
M
O
N
P
O
Q
P
R
Q
S
R
U
S
W
T
X
U
Y
V
Z
W
a
X
b
Y
c
Z
d
0
e
1
f
2
g
3
i
4
j
5
k
6
n
7
1
8
2
9
3
a
4
b
5
c
6
d
8
e
9

Subunit NUAM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUBM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUCM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NIMM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUEM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUFM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUGM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUHM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUIM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUJM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUKM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NULM of NADH:Ubiquinone Oxidoreductase (Complex I)

Acyl carrier protein ACPM1 of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NB4M of protein NADH:Ubiquinone Oxidoreductase (Complex I)

Acyl carrier protein ACPM2 of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NI2M of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NESM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUPM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NB6M of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUXM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUYM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUZM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NIAM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NEBM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NB2M of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NIDM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUVM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NI8M of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NI9M of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit N7BM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUUM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit N7BML assembly factor

Subunit NUNM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NU1M of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NU2M of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NU3M of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NU4M of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NU5M of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NU6M of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NB8M of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NIPM of NADH:Ubiquinone Oxidoreductase (Complex I)

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