SMTL ID : 6t5y.1

Crystal structure of AmpC from E.coli with Zidebactam (WCK 5107)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 4 residues within 4Å: Chain A: W.90, L.128, A.157, L.158 No protein-ligand interaction detected (PLIP)

1 x C8V: (2S,5R)-1-formyl-N'-[(3R)-piperidine-3-carbonyl]-5-[(sulfooxy)amino]piperidine-2-carbohydrazide(Covalent)

C8V.2: 14 residues within 4Å: Chain A: G.60, S.61, Q.117, D.120, Y.147, N.149, Y.218, N.286, L.290, K.312, T.313, G.314, A.315, N.343 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:S.61, A:Q.117, A:Q.117, A:N.149, A:N.286, A:T.313, A:T.313, A:A.315, A:A.315, A:N.343 Water bridges: A:Y.218, A:N.286, A:N.286, A:K.312 Salt bridges: A:K.312

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 2 residues within 4Å: Chain A: H.10 Ligands: CL.4 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.10

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 3 residues within 4Å: Chain A: H.10, R.11 Ligands: ZN.3 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lang, P.A. et al., Structural Investigations of the Inhibition of Escherichia coli AmpC beta-Lactamase by Diazabicyclooctanes. Antimicrob.Agents Chemother. (2021)

Release Date

2020-11-18

Peptides

Beta-lactamase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-lactamase

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