SMTL ID : 6tbw.1

Crystal structure of AmpC from E.coli with Avibactam

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.51 Å

Oligo State

monomer

Ligands

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.1: 5 residues within 4Å: Chain A: W.90, L.128, A.157, L.158, L.213 No protein-ligand interaction detected (PLIP)

1 x NXL: (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide(Covalent)

NXL.2: 11 residues within 4Å: Chain A: G.60, S.61, Q.117, Y.147, N.149, L.290, K.312, T.313, G.314, A.315, N.343 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:S.61, A:Q.117, A:Y.147, A:Y.147, A:N.149, A:T.313, A:A.315, A:N.343 Water bridges: A:Q.117, A:K.312, A:A.315 Salt bridges: A:K.312

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 2 residues within 4Å: Chain A: H.10 Ligands: CL.5 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.10 ZN.4: 1 residues within 4Å: Chain A: H.183 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:H.183, H2O.1, H2O.1, H2O.9, H2O.11

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 3 residues within 4Å: Chain A: H.10, R.11 Ligands: ZN.3 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lang, P.A. et al., Structural Investigations of the Inhibition of Escherichia coli AmpC beta-Lactamase by Diazabicyclooctanes. Antimicrob.Agents Chemother. (2021)

Release Date

2020-11-18

Peptides

Beta-lactamase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-lactamase

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