SMTL ID : 9bz0.1

Structure of an STK19-containing TC-NER complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

10 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.71, C.74, C.81, H.84 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.71, A:C.74, A:C.81, A:H.84 ZN.2: 4 residues within 4Å: Chain A: C.111, C.114, C.154, C.184 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.111, A:C.114, A:C.154, A:C.184 ZN.4: 4 residues within 4Å: Chain B: C.1196, C.1199, C.1214, C.1217 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.1196, B:C.1199, B:C.1214 ZN.5: 4 residues within 4Å: Chain C: C.88, C.90, C.94, C.97 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.88, C:C.90, C:C.94, C:C.97 ZN.6: 4 residues within 4Å: Chain I: C.17, C.20, C.39, C.42 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.17, I:C.20, I:C.39, I:C.42 ZN.7: 4 residues within 4Å: Chain I: C.86, C.89, C.114, C.119 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.86, I:C.89, I:C.114, I:C.119 ZN.8: 4 residues within 4Å: Chain J: C.7, C.10, C.44, C.45 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.7, J:C.10, J:C.44, J:C.45 ZN.9: 4 residues within 4Å: Chain L: C.19, C.22, C.36, C.39 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:C.19, L:C.22, L:C.36, L:C.39 ZN.10: 4 residues within 4Å: Chain M: C.28, C.31, C.52, C.55 4 PLIP interactions: 4 interactions with chain M Metal complexes: M:C.28, M:C.31, M:C.52, M:C.55 ZN.12: 4 residues within 4Å: Chain S: C.570, C.580, C.588, H.591 4 PLIP interactions: 4 interactions with chain S Metal complexes: S:C.570, S:C.580, S:C.588, S:H.591

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: D.495, D.497, D.499 Chain O: A.10 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.495, A:D.497, A:D.499, H2O.1, H2O.1 MG.11: 2 residues within 4Å: Chain R: D.649, E.650 3 PLIP interactions: 3 interactions with chain R Metal complexes: R:D.649, R:D.649, R:E.650

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mevissen, T.E.T. et al., STK19 couples RNA polymerase II to TFIIH during cell-free transcription-coupled DNA repair. To Be Published

Release Date

2024-12-25

Peptides

DNA-directed RNA polymerase subunit: A
DNA-directed RNA polymerase subunit beta: B
DNA-directed RNA polymerase II subunit RPB3: C
RNA polymerase Rpb4/RPC9 core domain-containing protein: D
DNA-directed RNA polymerase II subunit E: E
DNA-directed RNA polymerases I, II, and III subunit RPABC2: F
DNA-directed RNA polymerase II subunit RPB7: G
DNA-directed RNA polymerases I, II, and III subunit RPABC3: H
DNA-directed RNA polymerase II subunit RPB9: I
DNA-directed RNA polymerases I, II, and III subunit RPABC5: J
RNA polymerase II subunit J: K
RNA polymerase II subunit K: L
Transcription elongation factor 1 homolog: M
DNA excision repair protein ERCC-8: Q
DNA excision repair protein ERCC-6: R
UV-stimulated scaffold protein A: S
DNA damage-binding protein 1: T
DET1- and DDB1-associated protein 1: U
Inactive serine/threonine-protein kinase 19: V

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

Q
a

R
b

S
c

T
d

U
e

V
f

DNA-directed RNA polymerase subunit

DNA-directed RNA polymerase subunit beta

DNA-directed RNA polymerase II subunit RPB3

RNA polymerase Rpb4/RPC9 core domain-containing protein

DNA-directed RNA polymerase II subunit E

DNA-directed RNA polymerases I, II, and III subunit RPABC2

DNA-directed RNA polymerase II subunit RPB7

DNA-directed RNA polymerases I, II, and III subunit RPABC3

DNA-directed RNA polymerase II subunit RPB9

DNA-directed RNA polymerases I, II, and III subunit RPABC5

RNA polymerase II subunit J

RNA polymerase II subunit K

Transcription elongation factor 1 homolog

DNA excision repair protein ERCC-8

DNA excision repair protein ERCC-6

UV-stimulated scaffold protein A

DNA damage-binding protein 1

DET1- and DDB1-associated protein 1

Inactive serine/threonine-protein kinase 19

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