SMTL ID : 6tfu.1 (1 other biounit)

Crystal Structure of EGFR T790M/V948R in Complex with Covalent Pyrrolopyrimidine 14d

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x N7K: ~{N}-[3-[4-[[1-(phenylmethyl)indazol-5-yl]amino]-7~{H}-pyrrolo[2,3-d]pyrimidin-5-yl]phenyl]propanamide(Covalent)

N7K.1: 19 residues within 4Å: Chain A: L.29, V.37, A.54, K.56, C.86, L.88, L.99, M.101, Q.102, L.103, M.104, G.107, C.108, D.111, R.152, L.155, T.165, D.166, F.167 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.29, A:V.37, A:K.56, A:R.152, A:F.167 Hydrogen bonds: A:M.104, A:M.104 Water bridges: A:C.108, A:D.111, A:D.111

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: Q.102, K.157, H.161, K.163 5 PLIP interactions: 5 interactions with chain A Water bridges: A:K.157, A:K.157 Salt bridges: A:K.157, A:H.161, A:K.163 SO4.3: 3 residues within 4Å: Chain A: K.157, T.158, H.161 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.157 Salt bridges: A:K.157, A:H.161

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lategahn, J. et al., Targeting Her2-insYVMA with Covalent Inhibitors-A Focused Compound Screening and Structure-Based Design Approach. J.Med.Chem. (2020)

Release Date

2020-09-30

Peptides

Epidermal growth factor receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Epidermal growth factor receptor

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