SMTL ID : 7a2a.1 (1 other biounit)

Crystal Structure of EGFR-T790M/V948R in Complex with Spebrutinib and EAI001

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x 57N: (2R)-2-(1-oxo-1,3-dihydro-2H-isoindol-2-yl)-2-phenyl-N-(1,3-thiazol-2-yl)acetamide(Non-covalent)

57N.1: 15 residues within 4Å: Chain A: V.37, A.54, I.55, K.56, L.58, I.70, M.77, C.86, L.88, L.99, M.101, D.166, F.167, L.169 Ligands: 7G9.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.58, A:L.99, A:F.167 Hydrogen bonds: A:K.56 Water bridges: A:D.166

1 x 7G9: ~{N}-[3-[[5-fluoranyl-2-[[4-(2-methoxyethoxy)phenyl]amino]pyrimidin-4-yl]amino]phenyl]propanamide(Covalent)

7G9.2: 13 residues within 4Å: Chain A: V.37, A.54, M.101, Q.102, L.103, M.104, P.105, G.107, C.108, D.111, R.152, L.155 Ligands: 57N.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.37, A:R.152 Hydrogen bonds: A:M.104, A:M.104 Water bridges: A:C.108

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: R.87, L.89, Q.102 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.102 Water bridges: A:R.87 Salt bridges: A:R.87 SO4.4: 3 residues within 4Å: Chain A: K.157, T.158, H.161 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.158, A:T.158 Water bridges: A:K.157, A:H.161 Salt bridges: A:K.157, A:H.161

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 2 residues within 4Å: Chain A: R.114, K.224 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Niggenaber, J. et al., Complex Crystal Structures of EGFR with Third-Generation Kinase Inhibitors and Simultaneously Bound Allosteric Ligands. Acs Med.Chem.Lett. (2020)

Release Date

2020-11-11

Peptides

Epidermal growth factor receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Epidermal growth factor receptor

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