SMTL ID : 6tfw.1 (1 other biounit)

Crystal Structure of EGFR T790M/V948R in Complex with Covalent Pyrrolopyrimidine 18d

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x N7W: ~{N}-[5-[4-[[3-chloranyl-4-(pyridin-2-ylmethoxy)phenyl]amino]-7~{H}-pyrrolo[2,3-d]pyrimidin-5-yl]-2-[2-(dimethylamino)ethoxy]phenyl]propanamide(Covalent)

N7W.1: 22 residues within 4Å: Chain A: G.30, S.31, V.37, A.54, K.56, C.86, L.88, L.99, M.101, Q.102, L.103, M.104, G.107, C.108, D.111, R.152, L.155, T.165, D.166, F.167, L.169 Ligands: CL.5 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.37, A:A.54, A:R.152, A:F.167 Hydrogen bonds: A:M.104, A:M.104, A:T.165, A:D.166 Halogen bonds: A:L.99

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: K.157, T.158, H.161 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.157, A:H.161 SO4.3: 4 residues within 4Å: Chain A: Q.102, K.157, H.161, K.163 5 PLIP interactions: 5 interactions with chain A Water bridges: A:K.157, A:K.157 Salt bridges: A:K.157, A:H.161, A:K.163

1 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 3 residues within 4Å: Chain A: N.153, D.166 Ligands: CL.5 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.166, H2O.1, H2O.1

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 4 residues within 4Å: Chain A: K.56, D.166 Ligands: N7W.1, MG.4 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lategahn, J. et al., Targeting Her2-insYVMA with Covalent Inhibitors-A Focused Compound Screening and Structure-Based Design Approach. J.Med.Chem. (2020)

Release Date

2020-09-30

Peptides

Epidermal growth factor receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Epidermal growth factor receptor

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