SMTL ID : 6ulg.1

Cryo-EM structure of the FLCN-FNIP2-Rag-Ragulator complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Covalent)

GDP.1: 16 residues within 4Å: Chain G: S.16, G.17, S.18, G.19, K.20, N.21, S.22, H.127, K.128, D.130, L.131, S.163, I.164 Chain I: A.147, M.148, S.149 12 PLIP interactions: 11 interactions with chain G, 1 interactions with chain I Hydrogen bonds: G:S.18, G:G.19, G:G.19, G:N.21, G:N.21, G:S.22, G:S.22, G:K.128, G:I.164, I:A.147 Salt bridges: G:K.20, G:D.130

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Covalent)

GNP.2: 21 residues within 4Å: Chain H: L.69, R.70, R.71, S.72, G.73, K.74, S.75, S.76, L.91, S.95, T.96, F.117, P.118, G.119, H.178, K.179, D.181, S.219, I.220, Y.221 Ligands: MG.3 15 PLIP interactions: 15 interactions with chain H Hydrogen bonds: H:R.71, H:S.72, H:G.73, H:K.74, H:K.74, H:S.75, H:S.76, H:S.76, H:T.96, H:T.96, H:K.179, H:Y.221 Salt bridges: H:R.71, H:K.74, H:D.181

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain H: S.75, T.96 Ligands: GNP.2 2 PLIP interactions: 2 interactions with chain H Metal complexes: H:S.75, H:T.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shen, K. et al., Cryo-EM Structure of the Human FLCN-FNIP2-Rag-Ragulator Complex. Cell (2019)

Release Date

2019-11-20

Peptides

Folliculin: A
Ragulator complex protein LAMTOR3: B
Ragulator complex protein LAMTOR2: C
Ragulator complex protein LAMTOR5: D
Ragulator complex protein LAMTOR4: E
Ragulator complex protein LAMTOR1: F
Ras-related GTP-binding protein A: G
Ras-related GTP-binding protein C: H
Folliculin-interacting protein 2: I

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
A

C
B

D
C

E
D

F
E

G
F

H
G

I
N

Folliculin

Ragulator complex protein LAMTOR3

Ragulator complex protein LAMTOR2

Ragulator complex protein LAMTOR5

Ragulator complex protein LAMTOR4

Ragulator complex protein LAMTOR1

Ras-related GTP-binding protein A

Ras-related GTP-binding protein C

Folliculin-interacting protein 2

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