SMTL ID : 6v14.1

Crystal structure of the bromodomain of human BRD9 bound to TP472

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x QMG: 3-(6-acetylpyrrolo[1,2-a]pyrimidin-8-yl)-N-cyclopropyl-4-methylbenzamide(Non-covalent)

QMG.1: 8 residues within 4Å: Chain A: F.33, F.34, F.36, V.38, I.42, A.43, N.89, Y.95 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.33, A:F.33, A:F.34, A:F.36, A:F.36, A:V.38, A:I.42, A:A.43, A:Y.95 Hydrogen bonds: A:N.89, A:Y.95 Water bridges: A:Y.95 pi-Stacking: A:Y.95, A:Y.95

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: M.86, T.87, N.89, R.90, P.91, Y.96 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.86, A:R.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Karim, R.M. et al., Structural Basis of Inhibitor Selectivity in the BRD7/9 Subfamily of Bromodomains. J.Med.Chem. (2020)

Release Date

2020-03-11

Peptides

Bromodomain-containing protein 9: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 9

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