SMTL ID : 6vqb.1

Mammalian V-ATPase from rat brain soluble V1 region rotational state 2 with SidK and ADP (from focused refinement)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-1-3-3-3-mer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 16 residues within 4Å: Chain A: A.251, F.252, G.253, C.254, G.255, K.256, T.257, V.258, F.445, Q.522, N.523, G.524, Y.525 Chain D: L.398, R.400, K.403 12 PLIP interactions: 3 interactions with chain D, 9 interactions with chain A Hydrogen bonds: D:K.403, A:G.253, A:C.254, A:G.255, A:K.256, A:T.257, A:T.257, A:V.258, A:G.524 Salt bridges: D:R.400, D:R.400 pi-Stacking: A:F.445

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abbas, Y.M. et al., Structure of V-ATPase from the mammalian brain. Science (2020)

Release Date

2020-03-18

Peptides

ATPase H+-transporting V1 subunit A: ABC
V-type proton ATPase subunit B, brain isoform: DEF
ATPase H+-transporting V1 subunit D: G
V-type proton ATPase subunit E 1: HIJ
V-type proton ATPase subunit G: KLM
Uncharacterized protein: NOP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
H

H
I

I
J

J
K

K
M

L
N

M
O

N
Q

O
R

P
S

ATPase H+-transporting V1 subunit A

V-type proton ATPase subunit B, brain isoform

ATPase H+-transporting V1 subunit D

V-type proton ATPase subunit E 1

V-type proton ATPase subunit G

Uncharacterized protein

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