SMTL ID : 9b8o.1

Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 3, Vo

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-9-1-1-mer

Ligands

8 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain B: Y.272, F.311, G.312, A.313, S.343, N.344 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.344 NAG-NAG.2: 5 residues within 4Å: Chain B: N.290, T.292, T.306, T.314, T.316 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 7 residues within 4Å: Chain B: P.250, P.251, S.253, N.255, L.262, E.403 Chain R: Y.293 5 PLIP interactions: 1 interactions with chain R, 4 interactions with chain B Hydrogen bonds: R:Y.293, B:E.403 Hydrophobic interactions: B:P.251, B:L.262, B:E.403 NAG-NAG.4: 3 residues within 4Å: Chain B: F.295, N.297, F.300 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 6 residues within 4Å: Chain B: Q.266, N.267, S.269, W.276, K.277, D.278 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:W.276 NAG-NAG.6: 5 residues within 4Å: Chain B: H.349, N.351, T.380, N.381, V.382 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.381 NAG-NAG.7: 5 residues within 4Å: Chain B: D.298, Y.332, S.359, I.360, N.399 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.298 NAG-NAG.8: 7 residues within 4Å: Chain D: L.495, L.496, S.498 Chain G: N.70, E.71 Chain H: E.44, F.47 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- MAN- MAN- MAN- GLC- GLC- GLC- MAN- MAN: alpha-D-glucopyranose-(1-2)-alpha-D-glucopyranose-(1-3)-alpha-D-glucopyranose-(1-3)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN-GLC-GLC-GLC-MAN-MAN.9: 24 residues within 4Å: Chain D: W.490, E.493, T.494, G.497, S.498, L.501, Q.502, L.503, N.504, A.506, S.535, K.594, S.603, R.604, A.606, P.607, S.608, G.625, N.626 Chain E: E.116, K.202 Chain G: L.63, F.64 Ligands: WJP.11 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain E Hydrogen bonds: D:S.603, D:R.604, D:S.603, D:E.493, E:K.202

5 x PC1: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)

PC1.10: 28 residues within 4Å: Chain B: S.416, G.418, I.419, G.422, L.423, T.426, M.429 Chain I: E.9, Y.10, F.13, M.17, V.24 Chain J: Y.10, F.13, F.14, F.90, L.93, L.97, L.101 Chain K: L.101 Chain R: L.301, S.304, V.305, N.308, L.309, W.312, L.317 Ligands: PTY.19 19 PLIP interactions: 5 interactions with chain B, 6 interactions with chain J, 5 interactions with chain R, 2 interactions with chain I, 1 interactions with chain K Hydrophobic interactions: B:I.419, B:T.426, J:F.13, J:F.14, J:F.90, J:L.93, J:L.97, R:V.305, R:V.305, R:L.309, R:W.312, R:L.317, I:F.13, I:V.24, K:L.101 Hydrogen bonds: B:S.416, B:G.418, B:I.419, J:Y.10 PC1.14: 19 residues within 4Å: Chain D: H.372, G.373, N.376, I.377, A.380, M.416, F.419, M.442, S.445, G.446, I.449, I.450, L.792, I.793, L.797, F.800, L.801, K.822 Chain I: V.129 10 PLIP interactions: 9 interactions with chain D, 1 interactions with chain I Hydrophobic interactions: D:I.377, D:A.380, D:I.450, D:L.792, D:L.797, D:F.800, D:F.800, D:L.801, I:V.129 Hydrogen bonds: D:S.445 PC1.17: 23 residues within 4Å: Chain B: A.330, R.331 Chain E: W.16, M.19, I.20, G.23, I.24, Y.26, T.27, G.32, F.35 Chain O: E.9, Y.10, F.13, M.17, S.21, L.93, L.97 Chain P: P.8, Y.10, F.14, F.90 Ligands: PTY.20 18 PLIP interactions: 8 interactions with chain E, 5 interactions with chain O, 4 interactions with chain P, 1 interactions with chain B Hydrophobic interactions: E:W.16, E:M.19, E:I.20, E:I.20, E:I.24, E:Y.26, E:F.35, O:F.13, O:M.17, O:L.93, O:L.97, P:F.14, P:F.14, P:F.90, P:F.90 Hydrogen bonds: E:G.32 Salt bridges: O:E.9, B:R.331 PC1.18: 27 residues within 4Å: Chain B: Y.407, A.412, G.413, F.414 Chain E: I.11, A.14, F.15, A.17, C.18, M.19, V.21, V.22, C.25, Y.26, F.29, L.31, R.34 Chain R: Y.299, Y.303, F.307, T.315, L.319 Ligands: PTY.19, CLR.21, PC1.38, PTY.55, PTY.56 18 PLIP interactions: 4 interactions with chain B, 9 interactions with chain E, 5 interactions with chain R Hydrophobic interactions: B:F.414, E:I.11, E:A.14, E:F.15, E:F.15, E:A.17, E:V.21, E:V.22, E:F.29, R:F.307, R:T.315, R:L.319 Hydrogen bonds: B:Y.407, E:R.34 Salt bridges: B:D.410 pi-Cation interactions: B:F.414, R:Y.299, R:Y.303 PC1.38: 17 residues within 4Å: Chain B: Y.361, Y.407 Chain E: C.25, F.29, D.30, L.31 Chain M: Y.10, F.13, F.14 Chain N: Y.10, M.17, S.21, F.90, L.97 Ligands: PC1.18, CLR.21, PTY.29 13 PLIP interactions: 5 interactions with chain N, 1 interactions with chain E, 1 interactions with chain B, 6 interactions with chain M Hydrophobic interactions: N:M.17, N:F.90, N:L.97, N:L.97, E:F.29, M:Y.10, M:Y.10, M:F.13, M:F.13, M:F.14 Hydrogen bonds: N:Y.10, M:E.9 pi-Cation interactions: B:Y.407

1 x WJP: methyl (3R,6Z,10E,14E)-3,7,11,15,19-pentamethylicosa-6,10,14,18-tetraen-1-yl dihydrogen diphosphate(Non-covalent)

WJP.11: 14 residues within 4Å: Chain D: S.535, M.538, K.539, V.542, K.594, S.608, L.609, L.610, F.613, I.733, A.737, L.740 Chain E: I.195 Ligands: NAG-NAG-BMA-MAN-MAN-MAN-GLC-GLC-GLC-MAN-MAN.9 12 PLIP interactions: 12 interactions with chain D Hydrophobic interactions: D:K.539, D:V.542, D:L.610, D:F.613, D:I.733, D:L.740 Hydrogen bonds: D:L.609, D:L.610 Salt bridges: D:K.539, D:K.539, D:K.594, D:K.594

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.12: 3 residues within 4Å: Chain D: I.487, G.488, N.489 1 PLIP interactions: 1 interactions with chain D Hydrophobic interactions: D:N.489

1 x LP3: (7R)-4,7-DIHYDROXY-N,N,N-TRIMETHYL-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEPTACOSAN-1-AMINIUM 4-OXIDE(Non-covalent)

LP3.13: 20 residues within 4Å: Chain C: R.70 Chain D: L.415, L.418, C.467, F.468, K.470, S.471, L.472, N.473, I.474, G.476 Chain G: L.79, W.80 Chain H: W.17, M.24, F.28, V.31, S.33, A.34, V.35 10 PLIP interactions: 6 interactions with chain H, 4 interactions with chain D Hydrophobic interactions: H:W.17, H:M.24, H:F.28, H:F.28, H:F.28, D:L.415, D:L.418, D:K.470 Hydrogen bonds: H:A.34, D:N.473

9 x PTY: PHOSPHATIDYLETHANOLAMINE(Non-covalent)

PTY.15: 9 residues within 4Å: Chain D: S.581, G.585, Y.586, I.589, Y.593, Y.630, S.631, I.636, L.640 10 PLIP interactions: 10 interactions with chain D Hydrophobic interactions: D:Y.586, D:I.589, D:I.589, D:I.589, D:I.636, D:I.636, D:L.640, D:L.640 Hydrogen bonds: D:S.631, D:S.631 PTY.16: 14 residues within 4Å: Chain D: N.368, K.369, F.370, Y.448, L.452, L.455, F.456, I.458 Chain G: I.20, N.33, I.37, M.40, L.41, T.44 10 PLIP interactions: 3 interactions with chain G, 7 interactions with chain D Hydrophobic interactions: G:I.20, G:L.41, G:T.44, D:F.370, D:Y.448, D:L.452, D:L.455, D:F.456, D:I.458 Hydrogen bonds: D:N.368 PTY.19: 19 residues within 4Å: Chain B: G.413, F.414, F.415, W.420, L.424, T.426, L.427, L.430 Chain E: F.15, M.19, Y.26, R.34, F.35, D.36, W.39, F.40 Chain R: W.312 Ligands: PC1.10, PC1.18 21 PLIP interactions: 10 interactions with chain B, 8 interactions with chain E, 3 interactions with chain R Hydrophobic interactions: B:F.415, B:W.420, B:W.420, B:L.424, B:L.427, B:L.427, B:L.430, E:F.15, E:F.35, E:F.35, E:F.40, R:W.312, R:W.312, R:W.312 Hydrogen bonds: B:F.414, B:F.415, B:F.415, E:Y.26, E:D.36, E:D.36 Salt bridges: E:R.34 PTY.20: 21 residues within 4Å: Chain B: Y.326, V.328, S.329, W.333 Chain E: G.32, F.35, D.36, V.37, A.38 Chain O: F.13, M.17 Chain P: Y.10, F.13, F.14, L.93, L.97 Chain Q: Y.10, F.14, F.90, L.93 Ligands: PC1.17 15 PLIP interactions: 5 interactions with chain P, 1 interactions with chain E, 3 interactions with chain B, 5 interactions with chain Q, 1 interactions with chain O Hydrophobic interactions: P:Y.10, P:F.14, P:F.14, P:L.93, P:L.97, E:V.37, Q:F.14, Q:F.14, Q:F.90, Q:L.93, O:F.13 Hydrogen bonds: B:S.329, B:T.356, B:T.356, Q:Y.10 PTY.22: 11 residues within 4Å: Chain D: Y.394, T.398, I.547, F.551 Chain G: R.34, G.35, I.38, T.39, V.42, A.43, V.46 9 PLIP interactions: 6 interactions with chain G, 3 interactions with chain D Hydrophobic interactions: G:I.38, G:T.39, G:V.42, G:A.43, G:V.46, D:Y.394, D:T.398, D:F.551 Salt bridges: G:K.30 PTY.29: 17 residues within 4Å: Chain L: Y.10, F.13, F.14 Chain M: Y.10, F.14, S.21, F.25, F.90, L.97 Chain N: L.101 Chain R: Y.297, Y.299, Y.303 Ligands: CLR.21, PC1.38, PTY.54, PTY.56 9 PLIP interactions: 6 interactions with chain M, 1 interactions with chain L, 1 interactions with chain R, 1 interactions with chain N Hydrophobic interactions: M:F.14, M:F.14, M:F.25, M:F.90, M:F.90, L:F.13, N:L.101 Hydrogen bonds: M:Y.10, R:Y.297 PTY.54: 24 residues within 4Å: Chain K: E.9, Y.10, F.13 Chain L: Y.10, F.14, M.17, S.20, S.21, V.24, F.25, L.86, F.90, L.93, L.97 Chain M: L.101 Chain R: K.298, N.300, Y.303, V.306, F.307, V.310, M.314 Ligands: CLR.21, PTY.29 19 PLIP interactions: 3 interactions with chain K, 11 interactions with chain L, 4 interactions with chain R, 1 interactions with chain M Hydrophobic interactions: K:Y.10, K:F.13, L:F.14, L:F.14, L:M.17, L:V.24, L:F.25, L:F.90, L:F.90, L:L.93, L:L.93, L:L.97, R:V.306, R:M.314, M:L.101 Hydrogen bonds: K:E.9, L:Y.10, R:K.298, R:N.300 PTY.55: 14 residues within 4Å: Chain B: T.434, L.437, L.441 Chain E: G.3, L.4, L.6, L.7, I.11 Chain R: I.322, I.323, Y.326, N.327 Ligands: PC1.18, PTY.56 15 PLIP interactions: 6 interactions with chain E, 7 interactions with chain R, 2 interactions with chain B Hydrophobic interactions: E:L.6, E:L.7, E:L.7, E:I.11, R:I.322, R:I.323, R:I.323, R:Y.326, R:Y.326, R:Y.326, B:L.437, B:L.441 Hydrogen bonds: E:G.3, E:L.4, R:N.327 PTY.56: 21 residues within 4Å: Chain E: L.6 Chain K: S.20, S.21, V.24 Chain L: F.25, M.28, L.97, L.104 Chain R: M.314, L.317, A.318, V.321, I.322, S.325, Y.326, W.329, N.330 Ligands: PC1.18, CLR.21, PTY.29, PTY.55 12 PLIP interactions: 7 interactions with chain R, 4 interactions with chain L, 1 interactions with chain K Hydrophobic interactions: R:L.317, R:V.321, R:I.322, R:I.322, R:Y.326, R:W.329, L:F.25, L:F.25, L:L.97, L:L.104, K:V.24 Hydrogen bonds: R:N.330

30 x CLR: CHOLESTEROL(Non-covalent)

CLR.21: 9 residues within 4Å: Chain B: F.414 Chain E: C.18 Chain R: Y.299, Y.303 Ligands: PC1.18, PTY.29, PC1.38, PTY.54, PTY.56 3 PLIP interactions: 2 interactions with chain R, 1 interactions with chain B Hydrogen bonds: R:Y.299, R:Y.299 Hydrophobic interactions: B:F.414 CLR.23: 6 residues within 4Å: Chain J: L.70, V.74, N.78 Chain K: I.147 Ligands: CLR.24, CLR.28 3 PLIP interactions: 3 interactions with chain J Hydrophobic interactions: J:L.70, J:V.74 Hydrogen bonds: J:N.78 CLR.24: 8 residues within 4Å: Chain J: I.67, L.70, V.71, V.74, L.75, N.78 Chain K: Y.144 Ligands: CLR.23 4 PLIP interactions: 4 interactions with chain J Hydrophobic interactions: J:I.67, J:I.67, J:L.70, J:L.75 CLR.25: 7 residues within 4Å: Chain K: L.70, V.74, N.78 Chain L: I.147, I.151 Ligands: CLR.26, CLR.33 4 PLIP interactions: 3 interactions with chain L, 1 interactions with chain K Hydrophobic interactions: L:I.147, L:I.151, L:I.151, K:V.74 CLR.26: 7 residues within 4Å: Chain K: I.67, L.70, V.71, V.74, L.75, N.78 Ligands: CLR.25 5 PLIP interactions: 5 interactions with chain K Hydrophobic interactions: K:I.67, K:L.70, K:V.71, K:L.75, K:L.75 CLR.27: 7 residues within 4Å: Chain K: I.67, Y.68, V.71, L.75, L.150, T.154 Ligands: CLR.28 5 PLIP interactions: 5 interactions with chain K Hydrophobic interactions: K:Y.68, K:V.71, K:V.71, K:L.75, K:L.150 CLR.28: 8 residues within 4Å: Chain K: L.143, L.146, I.147, L.150, I.151, T.154 Ligands: CLR.23, CLR.27 6 PLIP interactions: 6 interactions with chain K Hydrophobic interactions: K:L.143, K:L.146, K:I.147, K:L.150 Hydrogen bonds: K:T.154, K:T.154 CLR.30: 9 residues within 4Å: Chain L: I.67, L.70, V.71, V.74, N.78 Chain M: I.147, I.151 Ligands: CLR.31, CLR.37 7 PLIP interactions: 2 interactions with chain M, 5 interactions with chain L Hydrophobic interactions: M:I.147, M:I.151, L:I.67, L:I.67, L:L.70, L:V.71 Hydrogen bonds: L:N.78 CLR.31: 6 residues within 4Å: Chain L: V.71, V.74, L.75, N.78 Ligands: CLR.30, CLR.32 3 PLIP interactions: 3 interactions with chain L Hydrophobic interactions: L:V.71, L:L.75, L:N.78 CLR.32: 9 residues within 4Å: Chain L: I.64, I.67, Y.68, V.71, L.75, L.146, L.150 Ligands: CLR.31, CLR.33 6 PLIP interactions: 6 interactions with chain L Hydrophobic interactions: L:I.64, L:I.67, L:I.67, L:Y.68, L:L.75, L:L.150 CLR.33: 8 residues within 4Å: Chain L: Y.68, L.143, I.147, L.150, I.151, T.154 Ligands: CLR.25, CLR.32 7 PLIP interactions: 7 interactions with chain L Hydrophobic interactions: L:L.143, L:I.147, L:L.150, L:L.150, L:I.151, L:T.154 Hydrogen bonds: L:T.154 CLR.34: 6 residues within 4Å: Chain M: N.78 Chain N: Y.144, I.147, I.151 Ligands: CLR.35, CLR.41 3 PLIP interactions: 3 interactions with chain N Hydrophobic interactions: N:Y.144, N:I.147, N:I.147 CLR.35: 8 residues within 4Å: Chain M: I.67, L.70, V.71, V.74, L.75, N.78 Ligands: CLR.34, CLR.36 6 PLIP interactions: 6 interactions with chain M Hydrophobic interactions: M:I.67, M:I.67, M:L.70, M:V.74, M:V.74, M:L.75 CLR.36: 9 residues within 4Å: Chain M: I.64, I.67, Y.68, V.71, L.75, L.146, L.150 Ligands: CLR.35, CLR.37 4 PLIP interactions: 4 interactions with chain M Hydrophobic interactions: M:I.64, M:Y.68, M:V.71, M:L.150 CLR.37: 7 residues within 4Å: Chain M: L.143, I.147, L.150, I.151, T.154 Ligands: CLR.30, CLR.36 7 PLIP interactions: 7 interactions with chain M Hydrophobic interactions: M:L.143, M:I.147, M:I.147, M:L.150, M:L.150, M:I.151 Hydrogen bonds: M:T.154 CLR.39: 9 residues within 4Å: Chain N: I.67, L.70, V.71, V.74, L.75, N.78 Chain O: Y.144 Ligands: CLR.40, CLR.46 6 PLIP interactions: 5 interactions with chain N, 1 interactions with chain O Hydrophobic interactions: N:I.67, N:I.67, N:V.71, N:V.74, N:L.75, O:Y.144 CLR.40: 9 residues within 4Å: Chain N: I.67, Y.68, V.71, L.75, L.146, L.150, T.154 Ligands: CLR.39, CLR.41 7 PLIP interactions: 7 interactions with chain N Hydrophobic interactions: N:I.67, N:Y.68, N:V.71, N:L.75, N:L.75, N:L.146, N:T.154 CLR.41: 8 residues within 4Å: Chain N: L.143, L.146, I.147, L.150, I.151, T.154 Ligands: CLR.34, CLR.40 6 PLIP interactions: 6 interactions with chain N Hydrophobic interactions: N:L.146, N:I.147, N:L.150, N:L.150, N:I.151, N:T.154 CLR.42: 10 residues within 4Å: Chain O: L.70, V.74, N.78 Chain P: V.140, L.143, Y.144, I.147, I.151 Ligands: CLR.43, CLR.50 7 PLIP interactions: 3 interactions with chain P, 4 interactions with chain O Hydrophobic interactions: P:V.140, P:Y.144, P:I.147, O:L.70, O:V.74, O:V.74 Hydrogen bonds: O:N.78 CLR.43: 8 residues within 4Å: Chain O: I.67, V.71, V.74, L.75, N.78 Chain P: Y.144 Ligands: CLR.42, CLR.44 6 PLIP interactions: 6 interactions with chain O Hydrophobic interactions: O:I.67, O:I.67, O:V.71, O:V.74, O:V.74, O:L.75 CLR.44: 8 residues within 4Å: Chain O: I.64, I.67, Y.68, V.71, L.150, T.154 Ligands: CLR.43, CLR.45 8 PLIP interactions: 8 interactions with chain O Hydrophobic interactions: O:I.64, O:I.64, O:I.67, O:I.67, O:Y.68, O:V.71, O:V.71, O:L.150 CLR.45: 8 residues within 4Å: Chain O: L.143, L.146, I.147, L.150, I.151, T.154 Ligands: CLR.44, CLR.46 3 PLIP interactions: 3 interactions with chain O Hydrophobic interactions: O:L.143, O:L.146, O:I.147 CLR.46: 7 residues within 4Å: Chain N: N.78 Chain O: L.143, Y.144, I.147, I.151 Ligands: CLR.39, CLR.45 5 PLIP interactions: 3 interactions with chain O, 2 interactions with chain N Hydrophobic interactions: O:L.143, O:I.147, O:I.151 Hydrogen bonds: N:N.78, N:N.78 CLR.47: 7 residues within 4Å: Chain P: V.74, N.78 Chain Q: L.143, Y.144, I.147 Ligands: CLR.48, CLR.52 5 PLIP interactions: 4 interactions with chain Q, 1 interactions with chain P Hydrophobic interactions: Q:L.143, Q:Y.144, Q:I.147, Q:I.147, P:V.74 CLR.48: 6 residues within 4Å: Chain P: L.70, V.71, V.74, L.75 Ligands: CLR.47, CLR.49 5 PLIP interactions: 5 interactions with chain P Hydrophobic interactions: P:L.70, P:V.71, P:V.74, P:V.74, P:L.75 CLR.49: 8 residues within 4Å: Chain P: I.67, Y.68, V.71, L.146, L.150, T.154 Ligands: CLR.48, CLR.50 9 PLIP interactions: 9 interactions with chain P Hydrophobic interactions: P:I.67, P:Y.68, P:Y.68, P:V.71, P:L.146, P:L.150, P:L.150, P:T.154 Hydrogen bonds: P:T.154 CLR.50: 8 residues within 4Å: Chain P: L.143, L.146, I.147, L.150, I.151, T.154 Ligands: CLR.42, CLR.49 4 PLIP interactions: 4 interactions with chain P Hydrophobic interactions: P:L.143, P:L.146, P:I.147 Hydrogen bonds: P:T.154 CLR.51: 8 residues within 4Å: Chain Q: I.67, Y.68, V.71, L.146, L.150, T.154 Ligands: CLR.52, CLR.53 5 PLIP interactions: 5 interactions with chain Q Hydrophobic interactions: Q:I.67, Q:Y.68, Q:V.71, Q:L.146, Q:T.154 CLR.52: 8 residues within 4Å: Chain Q: L.143, L.146, I.147, L.150, I.151, T.154 Ligands: CLR.47, CLR.51 6 PLIP interactions: 6 interactions with chain Q Hydrophobic interactions: Q:L.143, Q:L.146, Q:I.147, Q:L.150 Hydrogen bonds: Q:T.154, Q:T.154 CLR.53: 6 residues within 4Å: Chain Q: I.67, L.70, V.71, L.75, N.78 Ligands: CLR.51 4 PLIP interactions: 4 interactions with chain Q Hydrophobic interactions: Q:I.67, Q:L.70, Q:V.71, Q:V.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Coupland, C.E. et al., High-resolution electron cryomicroscopy of V-ATPase in native synaptic vesicles. Science (2024)

Release Date

2024-06-26

Peptides

ATPase H+-transporting V1 subunit D: A
V-type proton ATPase subunit S1: B
Synaptophysin: C
V-type proton ATPase 116 kDa subunit a 1: D
ATPase, H+ transporting, V0 subunit B (Predicted), isoform CRA_a: E
V-type proton ATPase subunit: F
V-type proton ATPase subunit e 2: G
Rnasek protein: H
V-type proton ATPase 16 kDa proteolipid subunit c: IJKLMNOPQ
Renin receptor: R
V-type proton ATPase subunit F: S

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
P

C
U

D
a

E
b

F
d

G
e

H
f

I
g

J
h

K
i

L
j

M
k

N
l

O
m

P
n

Q
o

R
p

S
L

Membrane

We predict this structure to be a membrane protein.
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ATPase H+-transporting V1 subunit D

V-type proton ATPase subunit S1

Synaptophysin

V-type proton ATPase 116 kDa subunit a 1

ATPase, H+ transporting, V0 subunit B (Predicted), isoform CRA_a

V-type proton ATPase subunit

V-type proton ATPase subunit e 2

Rnasek protein

V-type proton ATPase 16 kDa proteolipid subunit c

Renin receptor

V-type proton ATPase subunit F

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