SMTL ID : 7uzk.1

Rat Kidney V1 complex lacking subunit H with SidK and NCOA7B, State 1

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-1-1-3-1-3-3-1-mer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 15 residues within 4Å: Chain C: A.251, F.252, G.253, C.254, G.255, K.256, T.257, V.258, F.445, Q.522, N.523, G.524, Y.525 Chain F: R.400 Ligands: MG.2 16 PLIP interactions: 13 interactions with chain C, 3 interactions with chain F Hydrogen bonds: C:G.253, C:C.254, C:G.255, C:K.256, C:T.257, C:T.257, C:T.257, C:V.258, C:Q.522, C:G.524, F:K.403 Salt bridges: C:K.256, F:R.400, F:R.400 pi-Stacking: C:F.445, C:Y.525

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain C: T.257, E.279, R.280 Ligands: ADP.1 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:T.257

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abbas, Y.M. et al., Structure of V-ATPase with NCOA7B. To Be Published

Release Date

2023-11-22

Peptides

ATPase H+-transporting V1 subunit A: ABC
V-type proton ATPase subunit B, brain isoform: DEF
V-type proton ATPase subunit C 1: G
ATPase H+-transporting V1 subunit D: H
V-type proton ATPase subunit E 1: IJK
V-type proton ATPase subunit F: L
V-type proton ATPase subunit G: MNO
Effector SidK: PQR
Nuclear receptor coactivator 7B: S

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
Q

Q
R

R
S

S
T

ATPase H+-transporting V1 subunit A

V-type proton ATPase subunit B, brain isoform

V-type proton ATPase subunit C 1

ATPase H+-transporting V1 subunit D

V-type proton ATPase subunit E 1

V-type proton ATPase subunit F

V-type proton ATPase subunit G

Effector SidK

Nuclear receptor coactivator 7B

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