SMTL ID : 7uzh.1

Rat Kidney V-ATPase with SidK, State 2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-1-1-3-1-3-1-3-1-1-1-1-1-1-9-1-mer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 15 residues within 4Å: Chain B: F.252, G.253, C.254, G.255, K.256, T.257, V.258, F.445, P.446, Q.522, N.523, G.524, Y.525 Chain E: R.400, K.403 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:A.251, B:A.251, B:G.253, B:C.254, B:G.255, B:K.256, B:T.257, B:T.257, B:V.258, B:Q.522, B:G.524 Salt bridges: B:K.256, B:R.280 pi-Stacking: B:F.445, B:Y.525

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abbas, Y.M. et al., Structure of V-ATPase with NCOA7B. To Be Published

Release Date

2023-11-22

Peptides

ATPase H+-transporting V1 subunit A: ABC
V-type proton ATPase subunit B, brain isoform: DEF
V-type proton ATPase subunit C 1: G
ATPase H+-transporting V1 subunit D: H
V-type proton ATPase subunit E 1: IJK
V-type proton ATPase subunit F: L
V-type proton ATPase subunit G: MNO
V-type proton ATPase subunit H: P
Effector SidK: QRS
V-type proton ATPase 116 kDa subunit a isoform 1: T
ATPase, H+ transporting, V0 subunit B (Predicted), isoform CRA_a: U
V-type proton ATPase subunit S1: V
V-type proton ATPase subunit: W
V-type proton ATPase subunit e 2: X
Ribonuclease K: Y
V-type proton ATPase 16 kDa proteolipid subunit: Z01234567
Renin receptor: 8

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

S
S

T
a

U
b

V
c

W
d

X
e

Y
f

Z
g

0
h

1
i

2
j

3
k

4
l

5
m

6
n

7
o

8
p

Membrane

We predict this structure to be a membrane protein.
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ATPase H+-transporting V1 subunit A

V-type proton ATPase subunit B, brain isoform

V-type proton ATPase subunit C 1

ATPase H+-transporting V1 subunit D

V-type proton ATPase subunit E 1

V-type proton ATPase subunit F

V-type proton ATPase subunit G

V-type proton ATPase subunit H

Effector SidK

V-type proton ATPase 116 kDa subunit a isoform 1

ATPase, H+ transporting, V0 subunit B (Predicted), isoform CRA_a

V-type proton ATPase subunit S1

V-type proton ATPase subunit

V-type proton ATPase subunit e 2

Ribonuclease K

V-type proton ATPase 16 kDa proteolipid subunit

Renin receptor

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