SMTL ID : 9npx.1

SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosomal subunit (local refinement of the 40S body)

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY 2.10 Å
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
57 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
13 x K: POTASSIUM ION(Non-covalent)(Non-functional Binders)
1 x ZN: ZINC ION(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Gen, R. et al., SARS-CoV-2 nsp1 mediates broad inhibition of translation in mammals. Cell Rep (2025)
Release Date
2025-06-11
Peptides
40S ribosomal protein S2: A
40S ribosomal protein S4, X isoform: B
40S ribosomal protein S6: C
40S ribosomal protein S8: D
40S ribosomal protein S9: E
40S ribosomal protein S13: F
40S ribosomal protein S14: G
40S ribosomal protein S15a: H
40S ribosomal protein S17: I
40S ribosomal protein S21: J
40S ribosomal protein S23: K
40S ribosomal protein S24: L
40S ribosomal protein S26: M
40S ribosomal protein S27: N
60S ribosomal protein L41: O
40S ribosomal protein SA: P
Host translation inhibitor nsp1: Q
Eukaryotic translation initiation factor 1: R
40S ribosomal protein S7: S
40S ribosomal protein S11: T
40S ribosomal protein S30: U
40S ribosomal protein S3a: V
40S ribosomal protein uS3, RPS3: X
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
D
C
F
D
H
E
I
F
M
G
N
H
P
I
R
J
V
K
W
L
X
M
Z
N
a
O
f
P
h
Q
j
R
k
S
G
T
K
U
e
V
C
X
B

40S ribosomal protein S2

40S ribosomal protein S4, X isoform

40S ribosomal protein S6

40S ribosomal protein S8

40S ribosomal protein S9

40S ribosomal protein S13

40S ribosomal protein S14

40S ribosomal protein S15a

40S ribosomal protein S17

40S ribosomal protein S21

40S ribosomal protein S23

40S ribosomal protein S24

40S ribosomal protein S26

40S ribosomal protein S27

60S ribosomal protein L41

40S ribosomal protein SA

Host translation inhibitor nsp1

Eukaryotic translation initiation factor 1

40S ribosomal protein S7

40S ribosomal protein S11

40S ribosomal protein S30

40S ribosomal protein S3a

40S ribosomal protein uS3, RPS3

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