SMTL ID : 6y2f.1

Crystal structure (monoclinic form) of the complex resulting from the reaction between SARS-CoV-2 (2019-nCoV) main protease and tert-butyl (1-((S)-1-(((S)-4-(benzylamino)-3,4-dioxo-1-((S)-2-oxopyrrolidin-3-yl)butan-2-yl)amino)-3-cyclopropyl-1-oxopropan-2-yl)-2-oxo-1,2-dihydropyridin-3-yl)carbamate (alpha-ketoamide 13b)

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.95 Å
Oligo State
homo-dimer
Ligands
2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
2 x O6K: ~{tert}-butyl ~{N}-[1-[(2~{S})-3-cyclopropyl-1-oxidanylidene-1-[[(2~{S},3~{R})-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]amino]propan-2-yl]-2-oxidanylidene-pyridin-3-yl]carbamate(Covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Zhang, L. et al., Crystal structure of SARS-CoV-2 main protease provides a basis for design of improved alpha-ketoamide inhibitors. Science (2020)
Release Date
2020-03-04
Peptides
3C-like proteinase: AB
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
A

3C-like proteinase

Toggle Identical (AB)

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5r7y.1 | 5r7z.1 | 5r80.1 | 5r81.1 | 5r82.1 | 5r83.1 | 5r84.1 | 5r8t.1 | 5re4.1 | 5re5.1 | 5re6.1 | 5re7.1 | 5re8.1 | 5re9.1 | 5rea.1 | 5reb.1 | 5rec.1 | 5red.1 | 5ree.1 | 5ref.1 | 5reg.1 | 5reh.1 | 5rei.1 | 5rej.1 | 5rek.1 | 5rel.1 | 5rem.1 | 5ren.1 | 5reo.1 | 5rep.1  more...