SMTL ID : 6yd9.1

Ecoli GyrB24 with inhibitor 16a

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x ON2: N-[6-(3-azanylpropanoylamino)-1,3-benzothiazol-2-yl]-3,4-bis(chloranyl)-5-methyl-1H-pyrrole-2-carboxamide(Non-covalent)

ON2.1: 11 residues within 4Å: Chain A: N.46, E.50, D.73, R.76, G.77, I.78, P.79, I.94, V.120, R.136, T.165 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:T.165 Hydrogen bonds: A:D.73, A:R.136, A:R.136 Water bridges: A:E.50, A:E.50, A:R.76, A:T.165, A:T.165

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: K.189, E.193 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.189 EDO.3: 3 residues within 4Å: Chain A: D.207, R.209, D.210 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.207 Water bridges: A:D.207, A:R.209, A:R.209

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Skok, Z. et al., Exploring the Chemical Space of Benzothiazole-Based DNA Gyrase B Inhibitors. Acs Med.Chem.Lett. (2020)

Release Date

2020-12-30

Peptides

DNA gyrase subunit B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA gyrase subunit B

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