SMTL ID : 7p2m.1

E.coli GyrB24 with inhibitor LMD43 (EBL2560)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.16 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: P.79, T.80, G.81, R.136 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.80, A:G.81 Water bridges: A:T.80, A:R.136 Salt bridges: A:R.136

1 x N1N: 2-[[3,4-bis(chloranyl)-5-methyl-1~{H}-pyrrol-2-yl]carbonylamino]-4-phenylmethoxy-1,3-benzothiazole-6-carboxylic acid(Non-covalent)

N1N.2: 13 residues within 4Å: Chain A: V.43, N.46, E.50, D.73, R.76, G.77, I.78, P.79, I.94, V.120, R.136, T.165, V.167 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:R.76, A:P.79, A:I.94 Hydrogen bonds: A:D.73, A:T.165 Water bridges: A:N.46, A:R.136, A:R.136 Salt bridges: A:R.76, A:R.136 pi-Cation interactions: A:R.76

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cotman, A.E. et al., Discovery and Hit-to-Lead Optimization of Benzothiazole Scaffold-Based DNA Gyrase Inhibitors with Potent Activity against Acinetobacter baumannii and Pseudomonas aeruginosa. J.Med.Chem. (2023)

Release Date

2022-07-20

Peptides

DNA gyrase subunit B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA gyrase subunit B

Related Entries With Identical Sequence