SMTL ID : 7p2w.1

E.coli GyrB24 with inhibitor LMD92 (EBL2682)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x 4QR: 2-[[3,4-bis(chloranyl)-5-methyl-1H-pyrrol-2-yl]carbonylamino]-4-[(3-carboxyphenyl)methoxy]-1,3-benzothiazole-6-carboxylic acid(Non-covalent)

4QR.1: 16 residues within 4Å: Chain A: V.43, N.46, E.50, D.73, R.76, G.77, I.78, P.79, I.94, A.100, G.101, G.117, V.118, V.120, R.136, T.165 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:R.76, A:P.79, A:I.94, A:V.118 Hydrogen bonds: A:D.73, A:T.165 Water bridges: A:R.76, A:R.76, A:G.117, A:G.117, A:R.136, A:R.136, A:R.136, A:R.136 Salt bridges: A:R.76, A:R.136 pi-Cation interactions: A:R.76

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 5 residues within 4Å: Chain A: H.55, D.74, G.75, K.162, T.163 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.55, A:T.163, A:T.163, A:T.163

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 1 residues within 4Å: Chain A: D.106 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.106, H2O.4, H2O.4, H2O.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cotman, A.E. et al., Discovery and Hit-to-Lead Optimization of Benzothiazole Scaffold-Based DNA Gyrase Inhibitors with Potent Activity against Acinetobacter baumannii and Pseudomonas aeruginosa. J.Med.Chem. (2023)

Release Date

2022-07-20

Peptides

DNA gyrase subunit B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA gyrase subunit B

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