SMTL ID : 6ytg.1

CLK1 bound with beta-carboline KH-CARB13 (Cpd 3)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

2 x KHC: (4~{S})-7,8-bis(chloranyl)-9-methyl-1-oxidanylidene-spiro[2,4-dihydropyrido[3,4-b]indole-3,4'-piperidine]-4-carbonitrile(Non-covalent)

KHC.1: 15 residues within 4Å: Chain A: L.22, G.23, F.27, V.30, A.44, K.46, E.61, F.96, E.97, L.99, E.147, N.148, L.150, V.179, D.180 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.27, A:V.30, A:F.96, A:V.179, A:V.179 Hydrogen bonds: A:K.46, A:D.180 Water bridges: A:E.24, A:K.145, A:K.145 Halogen bonds: A:L.99 KHC.2: 9 residues within 4Å: Chain A: E.56, R.59, S.60, Q.63, G.182, S.183, A.184, T.185, E.189 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:E.56 Hydrogen bonds: A:S.60, A:T.185, A:E.189 Water bridges: A:T.185, A:Y.186, A:Y.186 Halogen bonds: A:Q.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schroder, M. et al., DFG-1 Residue Controls Inhibitor Binding Mode and Affinity, Providing a Basis for Rational Design of Kinase Inhibitor Selectivity. J.Med.Chem. (2020)

Release Date

2020-07-15

Peptides

Dual specificity protein kinase CLK1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dual specificity protein kinase CLK1

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