SMTL ID : 6yti.1

CLK1 bound with ETH1610 (Cpd 17)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: I.34, G.39, G.40, H.42 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.39 EDO.2: 7 residues within 4Å: Chain A: S.60, G.182, S.183, A.184, T.185, E.189, H.190 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.182, A:H.190 Water bridges: A:T.185 EDO.3: 3 residues within 4Å: Chain A: H.191, G.210, W.211 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.211 EDO.4: 3 residues within 4Å: Chain A: H.190, S.192, T.193 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.193

1 x 7A7: methyl 9-[(2-fluoranyl-4-methoxy-phenyl)amino]-[1,3]thiazolo[5,4-f]quinazoline-2-carboximidate(Non-covalent)

7A7.5: 18 residues within 4Å: Chain A: L.22, E.24, F.27, V.30, A.44, K.46, F.96, E.97, L.98, L.99, G.100, S.102, Y.104, D.105, E.147, L.150, V.179, D.180 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.30, A:F.96, A:E.147, A:V.179, A:V.179 Hydrogen bonds: A:K.46, A:L.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schroder, M. et al., DFG-1 Residue Controls Inhibitor Binding Mode and Affinity, Providing a Basis for Rational Design of Kinase Inhibitor Selectivity. J.Med.Chem. (2020)

Release Date

2020-07-15

Peptides

Dual specificity protein kinase CLK1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dual specificity protein kinase CLK1

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