- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x NAG- NAG- MAN- MAN- FUC: alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
- 8 x GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose(Non-covalent)
GAL-SIA.2: 3 residues within 4Å:- Chain A: K.60, N.63, D.87
5 PLIP interactions:5 interactions with chain A- Water bridges: A:N.63, A:N.63, A:D.87, A:D.87
- Salt bridges: A:K.60
GAL-SIA.22: 3 residues within 4Å:- Chain B: K.60, N.63, D.87
5 PLIP interactions:5 interactions with chain B- Water bridges: B:N.63, B:N.63, B:D.87, B:D.87
- Salt bridges: B:K.60
GAL-SIA.42: 3 residues within 4Å:- Chain C: K.60, N.63, D.87
5 PLIP interactions:5 interactions with chain C- Water bridges: C:N.63, C:N.63, C:D.87, C:D.87
- Salt bridges: C:K.60
GAL-SIA.62: 3 residues within 4Å:- Chain D: K.60, N.63, D.87
5 PLIP interactions:5 interactions with chain D- Water bridges: D:N.63, D:N.63, D:D.87, D:D.87
- Salt bridges: D:K.60
GAL-SIA.82: 3 residues within 4Å:- Chain E: K.60, N.63, D.87
5 PLIP interactions:5 interactions with chain E- Water bridges: E:N.63, E:N.63, E:D.87, E:D.87
- Salt bridges: E:K.60
GAL-SIA.102: 3 residues within 4Å:- Chain F: K.60, N.63, D.87
5 PLIP interactions:5 interactions with chain F- Water bridges: F:N.63, F:N.63, F:D.87, F:D.87
- Salt bridges: F:K.60
GAL-SIA.122: 3 residues within 4Å:- Chain G: K.60, N.63, D.87
5 PLIP interactions:5 interactions with chain G- Water bridges: G:N.63, G:N.63, G:D.87, G:D.87
- Salt bridges: G:K.60
GAL-SIA.142: 3 residues within 4Å:- Chain H: K.60, N.63, D.87
5 PLIP interactions:5 interactions with chain H- Water bridges: H:N.63, H:N.63, H:D.87, H:D.87
- Salt bridges: H:K.60
- 8 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG-FUC.3: 4 residues within 4Å:- Chain A: N.106, N.188, K.190, S.191
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain D- Hydrogen bonds: A:N.188, A:S.191, A:N.188, A:K.190
- Water bridges: A:R.219, A:K.476, A:K.476, D:Q.311
NAG-FUC.23: 4 residues within 4Å:- Chain B: N.106, N.188, K.190, S.191
3 PLIP interactions:1 interactions with chain C, 2 interactions with chain B- Water bridges: C:Q.311, B:R.219, B:K.476, B:K.476
- Hydrogen bonds: B:N.188, B:S.191, B:N.188, B:K.190
NAG-FUC.43: 4 residues within 4Å:- Chain C: N.106, N.188, K.190, S.191
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain A- Hydrogen bonds: C:N.188, C:S.191, C:N.188, C:K.190
- Water bridges: C:R.219, C:R.219, C:K.476, A:Q.311
NAG-FUC.63: 4 residues within 4Å:- Chain D: N.106, N.188, K.190, S.191
3 PLIP interactions:2 interactions with chain D, 1 interactions with chain B- Hydrogen bonds: D:N.188, D:S.191, D:N.188, D:K.190
- Water bridges: D:R.219, D:R.219, D:K.476, B:Q.311
NAG-FUC.83: 4 residues within 4Å:- Chain E: N.106, N.188, K.190, S.191
3 PLIP interactions:2 interactions with chain E, 1 interactions with chain H- Hydrogen bonds: E:N.188, E:S.191, E:N.188, E:K.190
- Water bridges: E:R.219, E:K.476, E:K.476, H:Q.311
NAG-FUC.103: 4 residues within 4Å:- Chain F: N.106, N.188, K.190, S.191
3 PLIP interactions:2 interactions with chain F, 1 interactions with chain G- Hydrogen bonds: F:N.188, F:S.191, F:N.188, F:K.190
- Water bridges: F:R.219, F:K.476, F:K.476, G:Q.311
NAG-FUC.123: 4 residues within 4Å:- Chain G: N.106, N.188, K.190, S.191
3 PLIP interactions:2 interactions with chain G, 1 interactions with chain E- Hydrogen bonds: G:N.188, G:S.191, G:N.188, G:K.190
- Water bridges: G:R.219, G:R.219, G:K.476, E:Q.311
NAG-FUC.143: 4 residues within 4Å:- Chain H: N.106, N.188, K.190, S.191
3 PLIP interactions:2 interactions with chain H, 1 interactions with chain F- Hydrogen bonds: H:N.188, H:S.191, H:N.188, H:K.190
- Water bridges: H:R.219, H:R.219, H:K.476, F:Q.311
- 16 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG-FUC.4: 6 residues within 4Å:- Chain A: N.241, N.245, L.249, F.278, P.281, Y.282
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:N.245, A:L.249
- Hydrogen bonds: A:F.278
NAG-NAG-FUC.5: 4 residues within 4Å:- Chain A: G.336, S.338, N.341, N.342
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:G.336
NAG-NAG-FUC.24: 6 residues within 4Å:- Chain B: N.241, N.245, L.249, F.278, P.281, Y.282
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:N.245, B:L.249
- Hydrogen bonds: B:F.278
NAG-NAG-FUC.25: 4 residues within 4Å:- Chain B: G.336, S.338, N.341, N.342
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:G.336
NAG-NAG-FUC.44: 6 residues within 4Å:- Chain C: N.241, N.245, L.249, F.278, P.281, Y.282
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:N.245, C:L.249
- Hydrogen bonds: C:F.278
NAG-NAG-FUC.45: 4 residues within 4Å:- Chain C: G.336, S.338, N.341, N.342
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:G.336
NAG-NAG-FUC.64: 6 residues within 4Å:- Chain D: N.241, N.245, L.249, F.278, P.281, Y.282
3 PLIP interactions:3 interactions with chain D- Hydrophobic interactions: D:N.245, D:L.249
- Hydrogen bonds: D:F.278
NAG-NAG-FUC.65: 4 residues within 4Å:- Chain D: G.336, S.338, N.341, N.342
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:G.336
NAG-NAG-FUC.84: 6 residues within 4Å:- Chain E: N.241, N.245, L.249, F.278, P.281, Y.282
3 PLIP interactions:3 interactions with chain E- Hydrophobic interactions: E:N.245, E:L.249
- Hydrogen bonds: E:F.278
NAG-NAG-FUC.85: 4 residues within 4Å:- Chain E: G.336, S.338, N.341, N.342
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:G.336
NAG-NAG-FUC.104: 6 residues within 4Å:- Chain F: N.241, N.245, L.249, F.278, P.281, Y.282
3 PLIP interactions:3 interactions with chain F- Hydrophobic interactions: F:N.245, F:L.249
- Hydrogen bonds: F:F.278
NAG-NAG-FUC.105: 4 residues within 4Å:- Chain F: G.336, S.338, N.341, N.342
1 PLIP interactions:1 interactions with chain F- Hydrogen bonds: F:G.336
NAG-NAG-FUC.124: 6 residues within 4Å:- Chain G: N.241, N.245, L.249, F.278, P.281, Y.282
3 PLIP interactions:3 interactions with chain G- Hydrophobic interactions: G:N.245, G:L.249
- Hydrogen bonds: G:F.278
NAG-NAG-FUC.125: 4 residues within 4Å:- Chain G: G.336, S.338, N.341, N.342
1 PLIP interactions:1 interactions with chain G- Hydrogen bonds: G:G.336
NAG-NAG-FUC.144: 6 residues within 4Å:- Chain H: N.241, N.245, L.249, F.278, P.281, Y.282
3 PLIP interactions:3 interactions with chain H- Hydrophobic interactions: H:N.245, H:L.249
- Hydrogen bonds: H:F.278
NAG-NAG-FUC.145: 4 residues within 4Å:- Chain H: G.336, S.338, N.341, N.342
1 PLIP interactions:1 interactions with chain H- Hydrogen bonds: H:G.336
- 16 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.6: 2 residues within 4Å:- Chain A: N.256, E.259
Ligand excluded by PLIPNAG.7: 4 residues within 4Å:- Chain A: R.465, K.469, E.482, N.485
Ligand excluded by PLIPNAG.26: 2 residues within 4Å:- Chain B: N.256, E.259
Ligand excluded by PLIPNAG.27: 4 residues within 4Å:- Chain B: R.465, K.469, E.482, N.485
Ligand excluded by PLIPNAG.46: 2 residues within 4Å:- Chain C: N.256, E.259
Ligand excluded by PLIPNAG.47: 4 residues within 4Å:- Chain C: R.465, K.469, E.482, N.485
Ligand excluded by PLIPNAG.66: 2 residues within 4Å:- Chain D: N.256, E.259
Ligand excluded by PLIPNAG.67: 4 residues within 4Å:- Chain D: R.465, K.469, E.482, N.485
Ligand excluded by PLIPNAG.86: 2 residues within 4Å:- Chain E: N.256, E.259
Ligand excluded by PLIPNAG.87: 4 residues within 4Å:- Chain E: R.465, K.469, E.482, N.485
Ligand excluded by PLIPNAG.106: 2 residues within 4Å:- Chain F: N.256, E.259
Ligand excluded by PLIPNAG.107: 4 residues within 4Å:- Chain F: R.465, K.469, E.482, N.485
Ligand excluded by PLIPNAG.126: 2 residues within 4Å:- Chain G: N.256, E.259
Ligand excluded by PLIPNAG.127: 4 residues within 4Å:- Chain G: R.465, K.469, E.482, N.485
Ligand excluded by PLIPNAG.146: 2 residues within 4Å:- Chain H: N.256, E.259
Ligand excluded by PLIPNAG.147: 4 residues within 4Å:- Chain H: R.465, K.469, E.482, N.485
Ligand excluded by PLIP- 8 x GOL: GLYCEROL(Non-functional Binders)
GOL.8: 5 residues within 4Å:- Chain A: L.18, Y.61, W.98, D.129, K.131
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:W.98, A:K.131
- Water bridges: A:D.129
GOL.28: 5 residues within 4Å:- Chain B: L.18, Y.61, W.98, D.129, K.131
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:W.98, B:K.131
- Water bridges: B:D.129
GOL.48: 5 residues within 4Å:- Chain C: L.18, Y.61, W.98, D.129, K.131
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:W.98, C:K.131
- Water bridges: C:D.129
GOL.68: 5 residues within 4Å:- Chain D: L.18, Y.61, W.98, D.129, K.131
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:W.98, D:K.131
- Water bridges: D:D.129
GOL.88: 5 residues within 4Å:- Chain E: L.18, Y.61, W.98, D.129, K.131
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:W.98, E:K.131
- Water bridges: E:Y.61
GOL.108: 5 residues within 4Å:- Chain F: L.18, Y.61, W.98, D.129, K.131
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:W.98, F:K.131
- Water bridges: F:Y.61
GOL.128: 5 residues within 4Å:- Chain G: L.18, Y.61, W.98, D.129, K.131
3 PLIP interactions:3 interactions with chain G- Hydrogen bonds: G:W.98, G:K.131
- Water bridges: G:Y.61
GOL.148: 5 residues within 4Å:- Chain H: L.18, Y.61, W.98, D.129, K.131
3 PLIP interactions:3 interactions with chain H- Hydrogen bonds: H:W.98, H:K.131
- Water bridges: H:Y.61
- 8 x QRH: (2~{E},4~{E})-5-(1,3-benzodioxol-5-yl)-~{N}-[6-(triphenyl-$l^{5}-phosphanyl)hexyl]penta-2,4-dienamide(Non-covalent)
QRH.9: 18 residues within 4Å:- Chain A: N.68, I.69, D.70, W.82, G.115, G.116, T.120, Y.128, E.197, S.198, A.328, F.329, Y.332, W.430, M.437, H.438, Y.440
- Ligands: LEA.10
10 PLIP interactions:10 interactions with chain A- Hydrophobic interactions: A:D.70, A:W.82, A:T.120, A:A.328, A:F.329, A:W.430, A:Y.440
- Hydrogen bonds: A:N.68
- Water bridges: A:Q.71
- pi-Stacking: A:W.82
QRH.29: 18 residues within 4Å:- Chain B: N.68, I.69, D.70, W.82, G.115, G.116, T.120, Y.128, E.197, S.198, A.328, F.329, Y.332, W.430, M.437, H.438, Y.440
- Ligands: LEA.30
10 PLIP interactions:10 interactions with chain B- Hydrophobic interactions: B:D.70, B:W.82, B:T.120, B:A.328, B:F.329, B:W.430, B:Y.440
- Hydrogen bonds: B:N.68
- Water bridges: B:Q.71
- pi-Stacking: B:W.82
QRH.49: 18 residues within 4Å:- Chain C: N.68, I.69, D.70, W.82, G.115, G.116, T.120, Y.128, E.197, S.198, A.328, F.329, Y.332, W.430, M.437, H.438, Y.440
- Ligands: LEA.50
10 PLIP interactions:10 interactions with chain C- Hydrophobic interactions: C:D.70, C:W.82, C:T.120, C:A.328, C:F.329, C:W.430, C:Y.440
- Hydrogen bonds: C:N.68
- Water bridges: C:Q.71
- pi-Stacking: C:W.82
QRH.69: 18 residues within 4Å:- Chain D: N.68, I.69, D.70, W.82, G.115, G.116, T.120, Y.128, E.197, S.198, A.328, F.329, Y.332, W.430, M.437, H.438, Y.440
- Ligands: LEA.70
10 PLIP interactions:10 interactions with chain D- Hydrophobic interactions: D:D.70, D:W.82, D:T.120, D:A.328, D:F.329, D:W.430, D:Y.440
- Hydrogen bonds: D:N.68
- Water bridges: D:Q.71
- pi-Stacking: D:W.82
QRH.89: 18 residues within 4Å:- Chain E: N.68, I.69, D.70, W.82, G.115, G.116, T.120, Y.128, E.197, S.198, A.328, F.329, Y.332, W.430, M.437, H.438, Y.440
- Ligands: LEA.90
10 PLIP interactions:10 interactions with chain E- Hydrophobic interactions: E:D.70, E:W.82, E:T.120, E:A.328, E:F.329, E:W.430, E:Y.440
- Hydrogen bonds: E:N.68
- Water bridges: E:D.70
- pi-Stacking: E:W.82
QRH.109: 18 residues within 4Å:- Chain F: N.68, I.69, D.70, W.82, G.115, G.116, T.120, Y.128, E.197, S.198, A.328, F.329, Y.332, W.430, M.437, H.438, Y.440
- Ligands: LEA.110
10 PLIP interactions:10 interactions with chain F- Hydrophobic interactions: F:D.70, F:W.82, F:T.120, F:A.328, F:F.329, F:W.430, F:Y.440
- Hydrogen bonds: F:N.68
- Water bridges: F:D.70
- pi-Stacking: F:W.82
QRH.129: 18 residues within 4Å:- Chain G: N.68, I.69, D.70, W.82, G.115, G.116, T.120, Y.128, E.197, S.198, A.328, F.329, Y.332, W.430, M.437, H.438, Y.440
- Ligands: LEA.130
10 PLIP interactions:10 interactions with chain G- Hydrophobic interactions: G:D.70, G:W.82, G:T.120, G:A.328, G:F.329, G:W.430, G:Y.440
- Hydrogen bonds: G:N.68
- Water bridges: G:D.70
- pi-Stacking: G:W.82
QRH.149: 18 residues within 4Å:- Chain H: N.68, I.69, D.70, W.82, G.115, G.116, T.120, Y.128, E.197, S.198, A.328, F.329, Y.332, W.430, M.437, H.438, Y.440
- Ligands: LEA.150
10 PLIP interactions:10 interactions with chain H- Hydrophobic interactions: H:D.70, H:W.82, H:T.120, H:A.328, H:F.329, H:W.430, H:Y.440
- Hydrogen bonds: H:N.68
- Water bridges: H:D.70
- pi-Stacking: H:W.82
- 8 x LEA: PENTANOIC ACID(Non-covalent)
LEA.10: 10 residues within 4Å:- Chain A: G.116, G.117, S.198, A.199, W.231, L.286, V.288, F.398, H.438
- Ligands: QRH.9
10 PLIP interactions:10 interactions with chain A- Hydrophobic interactions: A:W.231, A:W.231, A:L.286, A:V.288, A:F.398
- Hydrogen bonds: A:G.116, A:G.117, A:S.198, A:A.199
- Salt bridges: A:H.438
LEA.30: 10 residues within 4Å:- Chain B: G.116, G.117, S.198, A.199, W.231, L.286, V.288, F.398, H.438
- Ligands: QRH.29
10 PLIP interactions:10 interactions with chain B- Hydrophobic interactions: B:W.231, B:W.231, B:L.286, B:V.288, B:F.398
- Hydrogen bonds: B:G.116, B:G.117, B:S.198, B:A.199
- Salt bridges: B:H.438
LEA.50: 10 residues within 4Å:- Chain C: G.116, G.117, S.198, A.199, W.231, L.286, V.288, F.398, H.438
- Ligands: QRH.49
10 PLIP interactions:10 interactions with chain C- Hydrophobic interactions: C:W.231, C:W.231, C:L.286, C:V.288, C:F.398
- Hydrogen bonds: C:G.116, C:G.117, C:S.198, C:A.199
- Salt bridges: C:H.438
LEA.70: 10 residues within 4Å:- Chain D: G.116, G.117, S.198, A.199, W.231, L.286, V.288, F.398, H.438
- Ligands: QRH.69
10 PLIP interactions:10 interactions with chain D- Hydrophobic interactions: D:W.231, D:W.231, D:L.286, D:V.288, D:F.398
- Hydrogen bonds: D:G.116, D:G.117, D:S.198, D:A.199
- Salt bridges: D:H.438
LEA.90: 10 residues within 4Å:- Chain E: G.116, G.117, S.198, A.199, W.231, L.286, V.288, F.398, H.438
- Ligands: QRH.89
10 PLIP interactions:10 interactions with chain E- Hydrophobic interactions: E:W.231, E:W.231, E:L.286, E:V.288, E:F.398
- Hydrogen bonds: E:G.116, E:G.117, E:S.198, E:A.199
- Salt bridges: E:H.438
LEA.110: 10 residues within 4Å:- Chain F: G.116, G.117, S.198, A.199, W.231, L.286, V.288, F.398, H.438
- Ligands: QRH.109
10 PLIP interactions:10 interactions with chain F- Hydrophobic interactions: F:W.231, F:W.231, F:L.286, F:V.288, F:F.398
- Hydrogen bonds: F:G.116, F:G.117, F:S.198, F:A.199
- Salt bridges: F:H.438
LEA.130: 10 residues within 4Å:- Chain G: G.116, G.117, S.198, A.199, W.231, L.286, V.288, F.398, H.438
- Ligands: QRH.129
10 PLIP interactions:10 interactions with chain G- Hydrophobic interactions: G:W.231, G:W.231, G:L.286, G:V.288, G:F.398
- Hydrogen bonds: G:G.116, G:G.117, G:S.198, G:A.199
- Salt bridges: G:H.438
LEA.150: 10 residues within 4Å:- Chain H: G.116, G.117, S.198, A.199, W.231, L.286, V.288, F.398, H.438
- Ligands: QRH.149
10 PLIP interactions:10 interactions with chain H- Hydrophobic interactions: H:W.231, H:W.231, H:L.286, H:V.288, H:F.398
- Hydrogen bonds: H:G.116, H:G.117, H:S.198, H:A.199
- Salt bridges: H:H.438
- 32 x CL: CHLORIDE ION(Non-functional Binders)
CL.11: 2 residues within 4Å:- Chain A: W.376, Y.385
Ligand excluded by PLIPCL.12: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.13: 1 residues within 4Å:- Chain A: R.515
Ligand excluded by PLIPCL.14: 3 residues within 4Å:- Chain A: K.323, Y.420, R.515
Ligand excluded by PLIPCL.31: 2 residues within 4Å:- Chain B: W.376, Y.385
Ligand excluded by PLIPCL.32: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.33: 1 residues within 4Å:- Chain B: R.515
Ligand excluded by PLIPCL.34: 3 residues within 4Å:- Chain B: K.323, Y.420, R.515
Ligand excluded by PLIPCL.51: 2 residues within 4Å:- Chain C: W.376, Y.385
Ligand excluded by PLIPCL.52: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.53: 1 residues within 4Å:- Chain C: R.515
Ligand excluded by PLIPCL.54: 3 residues within 4Å:- Chain C: K.323, Y.420, R.515
Ligand excluded by PLIPCL.71: 2 residues within 4Å:- Chain D: W.376, Y.385
Ligand excluded by PLIPCL.72: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.73: 1 residues within 4Å:- Chain D: R.515
Ligand excluded by PLIPCL.74: 3 residues within 4Å:- Chain D: K.323, Y.420, R.515
Ligand excluded by PLIPCL.91: 2 residues within 4Å:- Chain E: W.376, Y.385
Ligand excluded by PLIPCL.92: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.93: 1 residues within 4Å:- Chain E: R.515
Ligand excluded by PLIPCL.94: 3 residues within 4Å:- Chain E: K.323, Y.420, R.515
Ligand excluded by PLIPCL.111: 2 residues within 4Å:- Chain F: W.376, Y.385
Ligand excluded by PLIPCL.112: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.113: 1 residues within 4Å:- Chain F: R.515
Ligand excluded by PLIPCL.114: 3 residues within 4Å:- Chain F: K.323, Y.420, R.515
Ligand excluded by PLIPCL.131: 2 residues within 4Å:- Chain G: W.376, Y.385
Ligand excluded by PLIPCL.132: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.133: 1 residues within 4Å:- Chain G: R.515
Ligand excluded by PLIPCL.134: 3 residues within 4Å:- Chain G: K.323, Y.420, R.515
Ligand excluded by PLIPCL.151: 2 residues within 4Å:- Chain H: W.376, Y.385
Ligand excluded by PLIPCL.152: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.153: 1 residues within 4Å:- Chain H: R.515
Ligand excluded by PLIPCL.154: 3 residues within 4Å:- Chain H: K.323, Y.420, R.515
Ligand excluded by PLIP- 32 x SO4: SULFATE ION(Non-functional Binders)
SO4.15: 5 residues within 4Å:- Chain A: R.470, Q.486, S.487, T.488, T.508
Ligand excluded by PLIPSO4.16: 4 residues within 4Å:- Chain A: Q.316, G.413, N.414, N.415
Ligand excluded by PLIPSO4.17: 3 residues within 4Å:- Chain A: R.347, K.348, Q.351
Ligand excluded by PLIPSO4.18: 2 residues within 4Å:- Chain A: K.45
- Chain C: K.105
Ligand excluded by PLIPSO4.35: 5 residues within 4Å:- Chain B: R.470, Q.486, S.487, T.488, T.508
Ligand excluded by PLIPSO4.36: 4 residues within 4Å:- Chain B: Q.316, G.413, N.414, N.415
Ligand excluded by PLIPSO4.37: 3 residues within 4Å:- Chain B: R.347, K.348, Q.351
Ligand excluded by PLIPSO4.38: 2 residues within 4Å:- Chain B: K.45
- Chain D: K.105
Ligand excluded by PLIPSO4.55: 5 residues within 4Å:- Chain C: R.470, Q.486, S.487, T.488, T.508
Ligand excluded by PLIPSO4.56: 4 residues within 4Å:- Chain C: Q.316, G.413, N.414, N.415
Ligand excluded by PLIPSO4.57: 3 residues within 4Å:- Chain C: R.347, K.348, Q.351
Ligand excluded by PLIPSO4.58: 2 residues within 4Å:- Chain B: K.105
- Chain C: K.45
Ligand excluded by PLIPSO4.75: 5 residues within 4Å:- Chain D: R.470, Q.486, S.487, T.488, T.508
Ligand excluded by PLIPSO4.76: 4 residues within 4Å:- Chain D: Q.316, G.413, N.414, N.415
Ligand excluded by PLIPSO4.77: 3 residues within 4Å:- Chain D: R.347, K.348, Q.351
Ligand excluded by PLIPSO4.78: 2 residues within 4Å:- Chain A: K.105
- Chain D: K.45
Ligand excluded by PLIPSO4.95: 5 residues within 4Å:- Chain E: R.470, Q.486, S.487, T.488, T.508
Ligand excluded by PLIPSO4.96: 4 residues within 4Å:- Chain E: Q.316, G.413, N.414, N.415
Ligand excluded by PLIPSO4.97: 3 residues within 4Å:- Chain E: R.347, K.348, Q.351
Ligand excluded by PLIPSO4.98: 2 residues within 4Å:- Chain E: K.45
- Chain G: K.105
Ligand excluded by PLIPSO4.115: 5 residues within 4Å:- Chain F: R.470, Q.486, S.487, T.488, T.508
Ligand excluded by PLIPSO4.116: 4 residues within 4Å:- Chain F: Q.316, G.413, N.414, N.415
Ligand excluded by PLIPSO4.117: 3 residues within 4Å:- Chain F: R.347, K.348, Q.351
Ligand excluded by PLIPSO4.118: 2 residues within 4Å:- Chain F: K.45
- Chain H: K.105
Ligand excluded by PLIPSO4.135: 5 residues within 4Å:- Chain G: R.470, Q.486, S.487, T.488, T.508
Ligand excluded by PLIPSO4.136: 4 residues within 4Å:- Chain G: Q.316, G.413, N.414, N.415
Ligand excluded by PLIPSO4.137: 3 residues within 4Å:- Chain G: R.347, K.348, Q.351
Ligand excluded by PLIPSO4.138: 2 residues within 4Å:- Chain F: K.105
- Chain G: K.45
Ligand excluded by PLIPSO4.155: 5 residues within 4Å:- Chain H: R.470, Q.486, S.487, T.488, T.508
Ligand excluded by PLIPSO4.156: 4 residues within 4Å:- Chain H: Q.316, G.413, N.414, N.415
Ligand excluded by PLIPSO4.157: 3 residues within 4Å:- Chain H: R.347, K.348, Q.351
Ligand excluded by PLIPSO4.158: 2 residues within 4Å:- Chain E: K.105
- Chain H: K.45
Ligand excluded by PLIP- 16 x BR: BROMIDE ION(Non-covalent)
BR.19: 3 residues within 4Å:- Chain A: F.525
- Chain E: F.525
- Ligands: BR.99
Ligand excluded by PLIPBR.20: 2 residues within 4Å:- Chain A: R.242, V.288
Ligand excluded by PLIPBR.39: 3 residues within 4Å:- Chain B: F.525
- Chain F: F.525
- Ligands: BR.119
Ligand excluded by PLIPBR.40: 2 residues within 4Å:- Chain B: R.242, V.288
Ligand excluded by PLIPBR.59: 3 residues within 4Å:- Chain C: F.525
- Chain H: F.525
- Ligands: BR.159
Ligand excluded by PLIPBR.60: 2 residues within 4Å:- Chain C: R.242, V.288
Ligand excluded by PLIPBR.79: 3 residues within 4Å:- Chain D: F.525
- Chain G: F.525
- Ligands: BR.139
Ligand excluded by PLIPBR.80: 2 residues within 4Å:- Chain D: R.242, V.288
Ligand excluded by PLIPBR.99: 3 residues within 4Å:- Chain A: F.525
- Chain E: F.525
- Ligands: BR.19
Ligand excluded by PLIPBR.100: 2 residues within 4Å:- Chain E: R.242, V.288
Ligand excluded by PLIPBR.119: 3 residues within 4Å:- Chain B: F.525
- Chain F: F.525
- Ligands: BR.39
Ligand excluded by PLIPBR.120: 2 residues within 4Å:- Chain F: R.242, V.288
Ligand excluded by PLIPBR.139: 3 residues within 4Å:- Chain D: F.525
- Chain G: F.525
- Ligands: BR.79
Ligand excluded by PLIPBR.140: 2 residues within 4Å:- Chain G: R.242, V.288
Ligand excluded by PLIPBR.159: 3 residues within 4Å:- Chain C: F.525
- Chain H: F.525
- Ligands: BR.59
Ligand excluded by PLIPBR.160: 2 residues within 4Å:- Chain H: R.242, V.288
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chavarria, D. et al., Fine-Tuning the Biological Profile of Multitarget Mitochondriotropic Antioxidants for Neurodegenerative Diseases. Antioxidants (Basel) (2021)
- Release Date
- 2021-06-09
- Peptides
- Cholinesterase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x NAG- NAG- MAN- MAN- FUC: alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
- 8 x GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose(Non-covalent)
- 8 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 16 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
- 16 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 8 x GOL: GLYCEROL(Non-functional Binders)
- 8 x QRH: (2~{E},4~{E})-5-(1,3-benzodioxol-5-yl)-~{N}-[6-(triphenyl-$l^{5}-phosphanyl)hexyl]penta-2,4-dienamide(Non-covalent)
- 8 x LEA: PENTANOIC ACID(Non-covalent)
- 32 x CL: CHLORIDE ION(Non-functional Binders)
- 32 x SO4: SULFATE ION(Non-functional Binders)
- 16 x BR: BROMIDE ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chavarria, D. et al., Fine-Tuning the Biological Profile of Multitarget Mitochondriotropic Antioxidants for Neurodegenerative Diseases. Antioxidants (Basel) (2021)
- Release Date
- 2021-06-09
- Peptides
- Cholinesterase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
A