SMTL ID : 7av1.1

LTA4 hydrolase in complex with fragment2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.298, H.302, E.321, Y.386 Ligands: RZK.7 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.298, A:H.302, A:E.321, H2O.1, H2O.5

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 3 residues within 4Å: Chain A: K.482, D.484 Ligands: YB.3 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.482 Water bridges: A:D.484

2 x YB: YTTERBIUM (III) ION(Non-covalent)

YB.3: 2 residues within 4Å: Chain A: D.484 Ligands: ACT.2 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:D.484, A:D.484, ACT.2 YB.4: 1 residues within 4Å: Chain A: D.178 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.178

2 x IMD: IMIDAZOLE(Non-covalent)

IMD.5: 7 residues within 4Å: Chain A: G.347, G.350, E.351, N.354, E.504, A.507, Q.511 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.351 Water bridges: A:G.350, A:Q.508 IMD.6: 8 residues within 4Å: Chain A: S.291, L.292, S.499, H.500, N.503, N.534, E.536, I.537 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.291, A:N.534 Water bridges: A:N.294, A:H.500, A:N.503

1 x RZK: 2-[5-(4-methoxyphenyl)-1,2,3,4-tetrazol-2-yl]ethanamine(Non-covalent)

RZK.7: 15 residues within 4Å: Chain A: Q.137, Q.139, A.140, Y.270, G.272, M.273, E.274, W.314, F.317, E.321, P.377, D.378, Y.381, Y.386 Ligands: ZN.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Q.139, A:A.140, A:F.317, A:Y.381 Hydrogen bonds: A:Q.139, A:E.274 pi-Stacking: A:Y.270

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Markert, C. et al., Discovery of LYS006, a Potent and Highly Selective Inhibitor of Leukotriene A 4 Hydrolase. J.Med.Chem. (2021)

Release Date

2021-02-17

Peptides

Leukotriene A-4 hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Leukotriene A-4 hydrolase

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