SMTL ID : 7c80.3 (3 other biounits)

E30 F-particle in complex with 4B10

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-6-6-6-6-6-mer

Ligands

6 x SPH: SPHINGOSINE(Covalent)

SPH.1: 17 residues within 4Å: Chain C: I.96, T.98, F.116, L.118, I.120, V.145, Y.147, P.169, M.182, I.184, M.187, Y.193, N.195, L.214, N.215, M.217, L.220 14 PLIP interactions: 14 interactions with chain C Hydrophobic interactions: C:I.96, C:L.118, C:I.120, C:V.145, C:Y.147, C:Y.147, C:Y.147, C:I.184, C:I.184, C:Y.193 Hydrogen bonds: C:T.98, C:N.195, C:L.214, C:N.215 SPH.2: 17 residues within 4Å: Chain I: I.96, T.98, F.116, L.118, I.120, V.145, Y.147, P.169, M.182, I.184, M.187, Y.193, N.195, L.214, N.215, M.217, L.220 14 PLIP interactions: 14 interactions with chain I Hydrophobic interactions: I:I.96, I:L.118, I:I.120, I:V.145, I:Y.147, I:Y.147, I:Y.147, I:I.184, I:I.184, I:Y.193 Hydrogen bonds: I:T.98, I:N.195, I:L.214, I:N.215 SPH.3: 17 residues within 4Å: Chain O: I.96, T.98, F.116, L.118, I.120, V.145, Y.147, P.169, M.182, I.184, M.187, Y.193, N.195, L.214, N.215, M.217, L.220 14 PLIP interactions: 14 interactions with chain O Hydrophobic interactions: O:I.96, O:L.118, O:I.120, O:V.145, O:Y.147, O:Y.147, O:Y.147, O:I.184, O:I.184, O:Y.193 Hydrogen bonds: O:T.98, O:N.195, O:L.214, O:N.215 SPH.4: 17 residues within 4Å: Chain U: I.96, T.98, F.116, L.118, I.120, V.145, Y.147, P.169, M.182, I.184, M.187, Y.193, N.195, L.214, N.215, M.217, L.220 14 PLIP interactions: 14 interactions with chain U Hydrophobic interactions: U:I.96, U:L.118, U:I.120, U:V.145, U:Y.147, U:Y.147, U:Y.147, U:I.184, U:I.184, U:Y.193 Hydrogen bonds: U:T.98, U:N.195, U:L.214, U:N.215 SPH.5: 17 residues within 4Å: Chain 0: I.96, T.98, F.116, L.118, I.120, V.145, Y.147, P.169, M.182, I.184, M.187, Y.193, N.195, L.214, N.215, M.217, L.220 14 PLIP interactions: 14 interactions with chain 0 Hydrophobic interactions: 0:I.96, 0:L.118, 0:I.120, 0:V.145, 0:Y.147, 0:Y.147, 0:Y.147, 0:I.184, 0:I.184, 0:Y.193 Hydrogen bonds: 0:T.98, 0:N.195, 0:L.214, 0:N.215 SPH.6: 17 residues within 4Å: Chain 6: I.96, T.98, F.116, L.118, I.120, V.145, Y.147, P.169, M.182, I.184, M.187, Y.193, N.195, L.214, N.215, M.217, L.220 14 PLIP interactions: 14 interactions with chain 6 Hydrophobic interactions: 6:I.96, 6:L.118, 6:I.120, 6:V.145, 6:Y.147, 6:Y.147, 6:Y.147, 6:I.184, 6:I.184, 6:Y.193 Hydrogen bonds: 6:T.98, 6:N.195, 6:L.214, 6:N.215

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, K. et al., Serotype specific epitopes identified by neutralizing antibodies underpin immunogenic differences in Enterovirus B. Nat Commun (2020)

Release Date

2020-07-29

Peptides

Light chain: AGMSY4
Heavy chain: BHNTZ5
VP1: CIOU06
VP2: DJPV17
VP3: EKQW28
VP4: FLRX39

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

G
L

M
L

S
L

Y
L

4
L

B
H

H
H

N
H

T
H

Z
H

5
H

C
A

I
A

O
A

U
A

0
A

6
A

D
B

J
B

P
B

V
B

1
B

7
B

E
C

K
C

Q
C

W
C

2
C

8
C

F
D

L
D

R
D

X
D

3
D

9
D

Light chain

Heavy chain

VP1

VP2

VP3

VP4

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