SMTL ID : 7c81.3 (3 other biounits)

E30 F-particle in complex with 6C5

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-6-6-6-6-6-mer

Ligands

6 x SPH: SPHINGOSINE(Covalent)

SPH.1: 15 residues within 4Å: Chain A: I.96, T.98, L.118, I.120, V.145, M.146, Y.147, S.170, V.171, M.182, I.184, Y.193, N.215, M.217, L.220 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.96, A:L.118, A:I.120, A:V.145, A:Y.147, A:Y.147, A:Y.147, A:Y.147, A:V.171, A:I.184, A:I.184, A:I.184 Hydrogen bonds: A:N.215 SPH.2: 15 residues within 4Å: Chain G: I.96, T.98, L.118, I.120, V.145, M.146, Y.147, S.170, V.171, M.182, I.184, Y.193, N.215, M.217, L.220 13 PLIP interactions: 13 interactions with chain G Hydrophobic interactions: G:I.96, G:L.118, G:I.120, G:V.145, G:Y.147, G:Y.147, G:Y.147, G:Y.147, G:V.171, G:I.184, G:I.184, G:I.184 Hydrogen bonds: G:N.215 SPH.3: 15 residues within 4Å: Chain M: I.96, T.98, L.118, I.120, V.145, M.146, Y.147, S.170, V.171, M.182, I.184, Y.193, N.215, M.217, L.220 13 PLIP interactions: 13 interactions with chain M Hydrophobic interactions: M:I.96, M:L.118, M:I.120, M:V.145, M:Y.147, M:Y.147, M:Y.147, M:Y.147, M:V.171, M:I.184, M:I.184, M:I.184 Hydrogen bonds: M:N.215 SPH.4: 15 residues within 4Å: Chain S: I.96, T.98, L.118, I.120, V.145, M.146, Y.147, S.170, V.171, M.182, I.184, Y.193, N.215, M.217, L.220 13 PLIP interactions: 13 interactions with chain S Hydrophobic interactions: S:I.96, S:L.118, S:I.120, S:V.145, S:Y.147, S:Y.147, S:Y.147, S:Y.147, S:V.171, S:I.184, S:I.184, S:I.184 Hydrogen bonds: S:N.215 SPH.5: 15 residues within 4Å: Chain Y: I.96, T.98, L.118, I.120, V.145, M.146, Y.147, S.170, V.171, M.182, I.184, Y.193, N.215, M.217, L.220 13 PLIP interactions: 13 interactions with chain Y Hydrophobic interactions: Y:I.96, Y:L.118, Y:I.120, Y:V.145, Y:Y.147, Y:Y.147, Y:Y.147, Y:Y.147, Y:V.171, Y:I.184, Y:I.184, Y:I.184 Hydrogen bonds: Y:N.215 SPH.6: 15 residues within 4Å: Chain 4: I.96, T.98, L.118, I.120, V.145, M.146, Y.147, S.170, V.171, M.182, I.184, Y.193, N.215, M.217, L.220 13 PLIP interactions: 13 interactions with chain 4 Hydrophobic interactions: 4:I.96, 4:L.118, 4:I.120, 4:V.145, 4:Y.147, 4:Y.147, 4:Y.147, 4:Y.147, 4:V.171, 4:I.184, 4:I.184, 4:I.184 Hydrogen bonds: 4:N.215

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, K. et al., Serotype specific epitopes identified by neutralizing antibodies underpin immunogenic differences in Enterovirus B. Nat Commun (2020)

Release Date

2020-07-29

Peptides

VP1: AGMSY4
VP2: BHNTZ5
VP3: CIOU06
VP4: DJPV17
Light chain: EKQW28
Heavy chain: FLRX39

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

G
A

M
A

S
A

Y
A

4
A

B
B

H
B

N
B

T
B

Z
B

5
B

C
C

I
C

O
C

U
C

0
C

6
C

D
D

J
D

P
D

V
D

1
D

7
D

E
L

K
L

Q
L

W
L

2
L

8
L

F
H

L
H

R
H

X
H

3
H

9
H

VP1

VP2

VP3

VP4

Light chain

Heavy chain

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