SMTL ID : 7c9s.3 (3 other biounits)

Echovirus 30 F-particle

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-6-6-6-mer

Ligands

6 x SPH: SPHINGOSINE(Covalent)

SPH.1: 19 residues within 4Å: Chain A: I.96, T.98, F.116, L.118, I.120, V.145, M.146, Y.147, P.169, S.170, V.171, M.182, I.184, Y.193, C.194, N.195, N.215, M.217, L.220 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:I.96, A:F.116, A:L.118, A:I.120, A:V.145, A:Y.147, A:Y.147, A:Y.147, A:Y.147, A:V.171, A:I.184, A:I.184, A:Y.193 Hydrogen bonds: A:C.194, A:N.195 SPH.2: 19 residues within 4Å: Chain E: I.96, T.98, F.116, L.118, I.120, V.145, M.146, Y.147, P.169, S.170, V.171, M.182, I.184, Y.193, C.194, N.195, N.215, M.217, L.220 15 PLIP interactions: 15 interactions with chain E Hydrophobic interactions: E:I.96, E:F.116, E:L.118, E:I.120, E:V.145, E:Y.147, E:Y.147, E:Y.147, E:Y.147, E:V.171, E:I.184, E:I.184, E:Y.193 Hydrogen bonds: E:C.194, E:N.195 SPH.3: 19 residues within 4Å: Chain I: I.96, T.98, F.116, L.118, I.120, V.145, M.146, Y.147, P.169, S.170, V.171, M.182, I.184, Y.193, C.194, N.195, N.215, M.217, L.220 15 PLIP interactions: 15 interactions with chain I Hydrophobic interactions: I:I.96, I:F.116, I:L.118, I:I.120, I:V.145, I:Y.147, I:Y.147, I:Y.147, I:Y.147, I:V.171, I:I.184, I:I.184, I:Y.193 Hydrogen bonds: I:C.194, I:N.195 SPH.4: 19 residues within 4Å: Chain M: I.96, T.98, F.116, L.118, I.120, V.145, M.146, Y.147, P.169, S.170, V.171, M.182, I.184, Y.193, C.194, N.195, N.215, M.217, L.220 15 PLIP interactions: 15 interactions with chain M Hydrophobic interactions: M:I.96, M:F.116, M:L.118, M:I.120, M:V.145, M:Y.147, M:Y.147, M:Y.147, M:Y.147, M:V.171, M:I.184, M:I.184, M:Y.193 Hydrogen bonds: M:C.194, M:N.195 SPH.5: 19 residues within 4Å: Chain Q: I.96, T.98, F.116, L.118, I.120, V.145, M.146, Y.147, P.169, S.170, V.171, M.182, I.184, Y.193, C.194, N.195, N.215, M.217, L.220 15 PLIP interactions: 15 interactions with chain Q Hydrophobic interactions: Q:I.96, Q:F.116, Q:L.118, Q:I.120, Q:V.145, Q:Y.147, Q:Y.147, Q:Y.147, Q:Y.147, Q:V.171, Q:I.184, Q:I.184, Q:Y.193 Hydrogen bonds: Q:C.194, Q:N.195 SPH.6: 19 residues within 4Å: Chain U: I.96, T.98, F.116, L.118, I.120, V.145, M.146, Y.147, P.169, S.170, V.171, M.182, I.184, Y.193, C.194, N.195, N.215, M.217, L.220 15 PLIP interactions: 15 interactions with chain U Hydrophobic interactions: U:I.96, U:F.116, U:L.118, U:I.120, U:V.145, U:Y.147, U:Y.147, U:Y.147, U:Y.147, U:V.171, U:I.184, U:I.184, U:Y.193 Hydrogen bonds: U:C.194, U:N.195

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, K. et al., Structures of Echovirus 30 in complex with its receptors inform a rational prediction for enterovirus receptor usage. Nat Commun (2020)

Release Date

2020-07-29

Peptides

VP1: AEIMQU
VP2: BFJNRV
VP3: CGKOSW
VP4: DHLPTX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
A

I
A

M
A

Q
A

U
A

B
B

F
B

J
B

N
B

R
B

V
B

C
C

G
C

K
C

O
C

S
C

W
C

D
D

H
D

L
D

P
D

T
D

X
D

VP1

VP2

VP3

VP4

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