SMTL ID : 7c9v.3 (3 other biounits)

E30 F-particle in complex with FcRn

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-6-6-6-6-6-mer

Ligands

6 x MYR: MYRISTIC ACID(Covalent)

MYR.1: 7 residues within 4Å: Chain D: G.1, A.2, I.29, Y.31 Chain J: T.27, I.29 Ligands: MYR.2 4 PLIP interactions: 2 interactions with chain J, 2 interactions with chain D Hydrophobic interactions: J:I.29, D:I.29, D:Y.31 Hydrogen bonds: J:T.27 MYR.2: 5 residues within 4Å: Chain J: G.1, A.2, I.29, Y.31 Ligands: MYR.1 2 PLIP interactions: 2 interactions with chain J Hydrophobic interactions: J:I.29, J:Y.31 MYR.3: 5 residues within 4Å: Chain P: G.1, A.2, I.29, Y.31 Ligands: MYR.4 2 PLIP interactions: 2 interactions with chain P Hydrophobic interactions: P:I.29, P:Y.31 MYR.4: 7 residues within 4Å: Chain P: T.27, I.29 Chain V: G.1, A.2, I.29, Y.31 Ligands: MYR.3 4 PLIP interactions: 2 interactions with chain P, 2 interactions with chain V Hydrophobic interactions: P:I.29, V:I.29, V:Y.31 Hydrogen bonds: P:T.27 MYR.5: 7 residues within 4Å: Chain 1: G.1, A.2, I.29, Y.31 Chain 7: T.27, I.29 Ligands: MYR.6 4 PLIP interactions: 2 interactions with chain 1, 2 interactions with chain 7 Hydrophobic interactions: 1:I.29, 1:Y.31, 7:I.29 Hydrogen bonds: 7:T.27 MYR.6: 5 residues within 4Å: Chain 7: G.1, A.2, I.29, Y.31 Ligands: MYR.5 2 PLIP interactions: 2 interactions with chain 7 Hydrophobic interactions: 7:I.29, 7:Y.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, K. et al., Structures of Echovirus 30 in complex with its receptors inform a rational prediction for enterovirus receptor usage. Nat Commun (2020)

Release Date

2020-07-29

Peptides

VP1: AGMSY4
VP2: BHNTZ5
VP3: CIOU06
VP4: DJPV17
IgG receptor FcRn large subunit p51: EKQW28
Beta-2-microglobulin: FLRX39

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

G
A

M
A

S
A

Y
A

4
A

B
B

H
B

N
B

T
B

Z
B

5
B

C
C

I
C

O
C

U
C

0
C

6
C

D
D

J
D

P
D

V
D

1
D

7
D

E
E

K
E

Q
E

W
E

2
E

8
E

F
F

L
F

R
F

X
F

3
F

9
F

VP1

VP2

VP3

VP4

IgG receptor FcRn large subunit p51

Beta-2-microglobulin

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