SMTL ID : 7ddo.1

Cryo-EM structure of human ACE2 and GD/1/2019 RBD

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.356, E.357, H.360, E.384 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.356, A:H.360, A:E.384

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: H.399, S.402, S.527, N.528 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.402, A:S.402, A:N.528 NAG.3: 2 residues within 4Å: Chain A: N.72, T.74 No protein-ligand interaction detected (PLIP) NAG.4: 3 residues within 4Å: Chain A: N.35, T.37, E.39 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.37, A:E.39, A:Q.322 NAG.5: 4 residues within 4Å: Chain B: F.20, F.24, N.25, L.50 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:F.24, B:L.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Niu, S. et al., Molecular basis of cross-species ACE2 interactions with SARS-CoV-2-like viruses of pangolin origin. Embo J. (2021)

Release Date

2021-05-19

Peptides

Angiotensin-converting enzyme 2: A
Spike protein S1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Angiotensin-converting enzyme 2

Spike protein S1

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