SMTL ID : 7dpn.1

Crystal structure of BRD2(BD1)with ligand ZB-BD-224 bound

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-trimer

Ligands

2 x HFU: 5-(1-naphthoyl)-11-methyl-8-((methylsulfonyl)methyl)-4,5-dihydro-2,3a1,5-triazadibenzo[cd,h]azulen-1(2H)-one(Non-covalent)

HFU.1: 12 residues within 4Å: Chain A: W.25, P.26, F.27, Q.29, V.31, K.35, L.36, L.38, Y.83, N.84, I.90, M.93 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.25, A:W.25, A:P.26, A:F.27, A:V.31, A:L.36, A:L.36, A:I.90 Hydrogen bonds: A:N.84, A:N.84 HFU.2: 12 residues within 4Å: Chain B: W.25, P.26, F.27, Q.29, V.31, K.35, L.36, L.38, Y.83, N.84, I.90, M.93 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:W.25, B:W.25, B:W.25, B:P.26, B:F.27, B:V.31, B:L.36, B:L.36, B:I.90, B:I.90 Hydrogen bonds: B:N.84, B:N.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Z. et al., Structure Base Design of A new chemotype of Four-Cycle Compounds as Bromodomain and Extra-Terminal (BET) Inhibitors with The Second Bromodomain Bias and Highly Anti-inflammatory Potency. To Be Published

Release Date

2021-12-22

Peptides

Bromodomain-containing protein 2: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Bromodomain-containing protein 2

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